Strain Fitness in Pseudomonas putida KT2440 around PP_2536

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
2,880,435	+		PP_2535	0.23	+0.3
2,880,436	-		PP_2535	0.24	+0.5
2,880,691	-		PP_2535	0.45	-0.6
2,880,825	+		PP_2535	0.57	+0.1
2,880,826	-		PP_2535	0.57	+0.1
2,880,826	-		PP_2535	0.57	-0.9
2,880,826	-		PP_2535	0.57	-1.2
2,881,270	+				+1.0
2,881,271	-				-0.4
2,881,271	-				+0.2
2,881,309	+				+0.2
2,881,310	-				-0.7
2,881,332	+				-1.0
2,881,333	-				-0.5
2,881,333	-				+0.2
2,881,333	-				-0.5
2,881,371	-				+0.2
2,881,371	-				-1.0
2,881,371	-				-1.8
2,881,386	+				-0.4
2,881,389	+				+0.2
2,881,390	-				+0.1
2,881,446	+				+1.1
2,881,446	+				-0.7
2,881,447	-				+1.5
2,881,447	-				+0.7
2,881,447	-				-0.8
2,881,557	+		PP_2536	0.27	-0.2
2,881,557	+		PP_2536	0.27	+0.6
2,881,557	+		PP_2536	0.27	-0.3
2,881,557	+		PP_2536	0.27	-1.2
2,881,558	-		PP_2536	0.27	+1.0
2,881,558	-		PP_2536	0.27	-0.4
2,881,558	-		PP_2536	0.27	+0.4
2,881,599	+		PP_2536	0.34	-0.6
2,881,683	+		PP_2536	0.47	-1.0
2,881,683	+		PP_2536	0.47	+1.2
2,881,797	+		PP_2536	0.66	-2.0
2,881,810	+		PP_2536	0.68	-0.5
2,881,811	-		PP_2536	0.68	+0.0
2,881,961	+				-0.7
2,881,961	+				-0.4
2,881,961	+				+2.0
2,881,962	-				-0.9
2,882,112	+				-0.7
2,882,112	+				+0.5
2,882,112	+				+1.3
2,882,112	+				+0.4
2,882,113	-				-0.6
2,882,124	+				+0.8
2,882,156	-				-0.2
2,882,156	-				+0.7
2,882,156	-				-1.5
2,882,156	-				-0.0
2,882,156	-				-0.7
2,882,163	+				-2.1
2,882,164	-				-1.0
2,882,164	-				+0.5
2,882,167	-				+0.0
2,882,247	-		PP_2537	0.14	-2.1
2,882,426	+		PP_2537	0.72	-0.0
2,882,426	+		PP_2537	0.72	+0.7
2,882,426	+		PP_2537	0.72	-0.6
2,882,427	-		PP_2537	0.72	-0.3
2,882,427	-		PP_2537	0.72	-0.0
2,882,427	-		PP_2537	0.72	-1.3
2,882,427	-		PP_2537	0.72	+0.3
2,882,430	-		PP_2537	0.73	-0.6
2,882,706	+		PP_2538	0.16	+0.3
2,882,706	+		PP_2538	0.16	+0.9
2,882,706	+		PP_2538	0.16	+0.8
2,882,706	+		PP_2538	0.16	-1.1
2,882,706	+		PP_2538	0.16	+0.3
2,882,707	-		PP_2538	0.16	-0.1
2,882,707	-		PP_2538	0.16	+0.7
2,882,712	+		PP_2538	0.17	-1.5
2,882,721	+		PP_2538	0.18	-1.2
2,882,773	-		PP_2538	0.25	-0.5
2,882,773	-		PP_2538	0.25	+1.0
2,882,865	+		PP_2538	0.38	-0.4