Strain Fitness in Pseudomonas putida KT2440 around PP_2474

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
2,819,735	+		PP_2473	0.52	-0.9
2,819,735	+		PP_2473	0.52	-1.6
2,819,736	-		PP_2473	0.52	-0.4
2,819,736	-				+0.4
2,819,736	-		PP_2473	0.52	+0.8
2,819,738	+		PP_2473	0.52	-0.3
2,819,738	+		PP_2473	0.52	-0.3
2,819,739	-		PP_2473	0.52	+0.1
2,819,803	+		PP_2473	0.59	+0.9
2,819,803	+		PP_2473	0.59	-1.8
2,819,803	+		PP_2473	0.59	+0.5
2,819,804	-		PP_2473	0.59	+0.9
2,819,846	+		PP_2473	0.63	-0.3
2,819,846	+		PP_2473	0.63	+1.9
2,819,847	-		PP_2473	0.64	+0.7
2,819,853	-		PP_2473	0.64	-1.8
2,819,909	+		PP_2473	0.70	-0.6
2,819,909	+		PP_2473	0.70	+0.6
2,819,909	+		PP_2473	0.70	+0.7
2,819,910	-		PP_2473	0.70	+0.6
2,819,928	+		PP_2473	0.72	+0.3
2,819,928	+		PP_2473	0.72	+0.1
2,819,928	+		PP_2473	0.72	-0.3
2,819,929	-		PP_2473	0.72	-0.7
2,819,929	-		PP_2473	0.72	+1.1
2,819,929	-		PP_2473	0.72	-0.1
2,819,929	-		PP_2473	0.72	+0.2
2,819,929	-		PP_2473	0.72	-0.2
2,819,929	-		PP_2473	0.72	+0.7
2,819,947	+		PP_2473	0.74	+0.1
2,819,956	+		PP_2473	0.75	-0.4
2,819,999	+		PP_2473	0.79	+0.2
2,820,023	-		PP_2473	0.82	+0.5
2,820,045	+		PP_2473	0.84	-1.5
2,820,045	+		PP_2473	0.84	+0.1
2,820,045	+		PP_2473	0.84	-0.2
2,820,046	-		PP_2473	0.84	+0.6
2,820,046	-		PP_2473	0.84	+0.1
2,820,046	-		PP_2473	0.84	+1.4
2,820,061	-		PP_2473	0.86	+0.3
2,820,088	+		PP_2473	0.88	+0.3
2,820,089	-		PP_2473	0.89	-1.0
2,820,092	-		PP_2473	0.89	+0.2
2,820,110	+				-0.3
2,820,110	+				-1.5
2,820,181	+				-0.7
2,820,181	+				+1.0
2,820,235	+				+1.4
2,820,235	+				+0.9
2,820,251	+				+0.0
2,820,251	+				-1.5
2,820,252	-				-0.0
2,820,252	-				-0.7
2,820,252	-				+0.0
2,820,252	-				+0.7
2,820,272	-				+0.2
2,820,296	+				+0.6
2,820,296	+				+1.4
2,820,297	-				+1.6
2,820,297	-				+1.4
2,820,297	-				+1.7
2,820,297	-				+0.1
2,820,297	-				+0.7
2,820,297	-				+0.7
2,820,298	+				+0.9
2,820,298	+				-0.7
2,820,298	+				-1.5
2,820,299	-				+1.2
2,820,427	+				+0.4
2,820,504	-				-1.1
2,820,504	-				+0.9
2,820,531	+				-0.9
2,820,531	+				+1.9
2,821,063	+		PP_2474	0.57	+0.7
2,821,147	-		PP_2474	0.70	-0.1
2,821,252	+		PP_2474	0.87	+0.9
2,821,255	+		PP_2474	0.88	+0.5
2,821,267	-		PP_2474	0.90	+1.3
2,821,326	+				-1.1
2,821,338	+				-0.1
2,821,339	-				-0.1
2,821,347	+				+0.1
2,821,347	+				-0.3
2,821,347	+				+0.7
2,821,348	-				+0.9
2,821,378	+				-0.1
2,821,379	-				-0.2
2,821,427	+				+0.3
2,821,438	-				-0.9
2,821,485	+				+1.6
2,821,485	+				+0.0
2,821,485	+				-1.0
2,821,515	-				-0.1
2,821,633	+				+2.1
2,821,633	+				+0.0
2,821,634	-				-1.5
2,821,634	-				-0.4
2,821,634	-				+0.1
2,821,636	-				+0.5
2,821,636	-				+0.1
2,821,756	+				+0.4
2,821,757	-				-1.9
2,821,757	-				-1.7
2,821,757	-				+0.6
2,821,854	+		PP_2475	0.22	-0.4
2,821,881	+		PP_2475	0.27	+0.1
2,821,882	-		PP_2475	0.27	-1.4
2,821,906	-		PP_2475	0.31	+0.9
2,821,983	+				+1.4
2,821,984	-		PP_2475	0.44	+1.4
2,821,999	+		PP_2475	0.47	-0.9
2,822,007	+		PP_2475	0.48	+0.7
2,822,007	+		PP_2475	0.48	-2.3
2,822,007	+		PP_2475	0.48	+1.4
2,822,007	+				+1.4
2,822,007	+		PP_2475	0.48	-0.2
2,822,062	+		PP_2475	0.57	-1.1
2,822,138	+		PP_2475	0.70	+1.1
2,822,138	+		PP_2475	0.70	-0.4
2,822,206	-		PP_2475	0.81	-0.2
2,822,249	+				+0.1
2,822,249	+		PP_2475	0.89	-1.6
2,822,249	+		PP_2475	0.89	+2.6
2,822,249	+		PP_2475	0.89	+2.3
2,822,249	+		PP_2475	0.89	-1.5
2,822,253	-				+1.4
2,822,253	-		PP_2475	0.89	+0.1