Strain Fitness in Pseudomonas putida KT2440 around PP_2215

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
2,524,837	-				+1.2
2,524,837	-				-0.2
2,524,985	+				+2.1
2,524,986	-				+1.1
2,524,993	-				+1.1
2,525,155	-		PP_2214	0.23	+1.3
2,525,156	+		PP_2214	0.23	-1.7
2,525,311	+				+2.4
2,525,431	+		PP_2214	0.59	+0.1
2,525,432	-		PP_2214	0.59	-0.1
2,525,458	+		PP_2214	0.62	+0.6
2,525,568	+		PP_2214	0.77	-0.4
2,525,569	-		PP_2214	0.77	-0.8
2,525,594	+		PP_2214	0.80	+0.1
2,525,595	-		PP_2214	0.80	-0.3
2,525,595	-		PP_2214	0.80	-2.1
2,525,653	+		PP_2214	0.88	+0.9
2,525,743	+				+1.0
2,525,744	-				-0.2
2,525,920	+		PP_2215	0.14	-1.6
2,525,921	-		PP_2215	0.14	-0.9
2,525,921	-		PP_2215	0.14	-1.1
2,526,041	+		PP_2215	0.24	+0.8
2,526,135	+		PP_2215	0.32	+2.0
2,526,246	-		PP_2215	0.41	+0.2
2,526,538	+		PP_2215	0.65	+1.1
2,526,539	-		PP_2215	0.65	+0.4
2,526,539	-		PP_2215	0.65	-1.5
2,526,836	+				+1.9
2,526,836	+				+1.3
2,526,945	+				-0.0
2,526,946	-				-0.7
2,526,967	-				+0.3
2,526,967	-				-0.5
2,526,967	-				-0.3
2,527,148	+		PP_2216	0.17	+0.3
2,527,148	+		PP_2216	0.17	-0.6
2,527,148	+		PP_2216	0.17	+0.3
2,527,157	+		PP_2216	0.18	-1.2
2,527,157	+		PP_2216	0.18	-2.0
2,527,158	-		PP_2216	0.18	-0.7
2,527,169	+		PP_2216	0.19	-1.3
2,527,394	+		PP_2216	0.39	+0.7
2,527,394	+		PP_2216	0.39	-1.1
2,527,394	+		PP_2216	0.39	-0.5
2,527,395	-		PP_2216	0.39	+0.7
2,527,395	-		PP_2216	0.39	+0.7
2,527,395	-		PP_2216	0.39	+0.6
2,527,423	+		PP_2216	0.41	+0.9
2,527,536	+		PP_2216	0.51	-0.7
2,527,537	-		PP_2216	0.51	-0.7
2,527,647	-		PP_2216	0.61	-0.2
2,527,743	-		PP_2216	0.70	-1.0
2,527,743	-		PP_2216	0.70	-0.7
2,527,848	+		PP_2216	0.79	+0.1
2,527,848	+		PP_2216	0.79	+0.2
2,527,849	-		PP_2216	0.79	+1.2
2,527,849	-		PP_2216	0.79	-0.4