Strain Fitness in Pseudomonas putida KT2440 around PP_1821

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
2,047,485	+		PP_1820	0.55	+1.1
2,047,515	+		PP_1820	0.58	+0.5
2,047,515	+		PP_1820	0.58	-0.8
2,047,515	+		PP_1820	0.58	-0.5
2,047,515	+		PP_1820	0.58	-0.2
2,047,516	-		PP_1820	0.58	-0.3
2,047,516	-		PP_1820	0.58	-1.1
2,047,516	-				+0.5
2,047,699	-		PP_1820	0.73	+0.6
2,047,719	+		PP_1820	0.75	-0.6
2,047,719	+		PP_1820	0.75	-0.5
2,047,720	-		PP_1820	0.75	+0.4
2,047,800	-		PP_1820	0.82	-2.0
2,047,921	+				-0.5
2,047,921	+				-0.7
2,047,922	-				+0.4
2,047,922	-				-0.1
2,048,030	-				-0.9
2,048,030	-				+2.5
2,048,030	-				-0.3
2,048,030	-				+0.8
2,048,037	+				-0.4
2,048,162	+				+0.2
2,048,162	+				+0.2
2,048,162	+				+2.0
2,048,162	+				-0.9
2,048,163	-				-0.6
2,048,163	-				-0.2
2,048,172	-				-1.3
2,048,172	-				+0.8
2,048,172	-				-0.2
2,048,180	+				-0.7
2,048,180	+				+3.5
2,048,198	+				+1.5
2,048,198	+				-0.5
2,048,198	+				+0.8
2,048,198	+				+1.1
2,048,199	-				-0.0
2,048,237	+		PP_1821	0.13	-1.5
2,048,237	+		PP_1821	0.13	-0.1
2,048,316	+		PP_1821	0.26	-0.4
2,048,341	+		PP_1821	0.30	-0.6
2,048,341	+		PP_1821	0.30	-0.0
2,048,341	+		PP_1821	0.30	-0.4
2,048,345	+		PP_1821	0.31	+0.4
2,048,346	-		PP_1821	0.31	-1.9
2,048,346	-		PP_1821	0.31	-0.4
2,048,346	-		PP_1821	0.31	-0.6
2,048,375	+		PP_1821	0.36	+1.0
2,048,376	-		PP_1821	0.36	-0.1
2,048,376	-		PP_1821	0.36	-0.2
2,048,422	+		PP_1821	0.44	-1.4
2,048,457	-		PP_1821	0.49	+0.1
2,048,471	+		PP_1821	0.52	+0.4
2,048,471	+		PP_1821	0.52	+0.1
2,048,471	+				-0.3
2,048,472	-		PP_1821	0.52	+0.0
2,048,501	+		PP_1821	0.57	+0.3
2,048,502	-		PP_1821	0.57	+0.1
2,048,535	-		PP_1821	0.62	+0.5
2,048,535	-		PP_1821	0.62	-0.2
2,048,558	+		PP_1821	0.66	-0.3
2,048,603	+		PP_1821	0.74	-0.3
2,048,603	+		PP_1821	0.74	-0.3
2,048,604	-		PP_1821	0.74	+1.7
2,048,645	+		PP_1821	0.81	-0.9
2,048,645	+		PP_1821	0.81	-0.5
2,048,646	-		PP_1821	0.81	-0.9
2,048,646	-		PP_1821	0.81	-1.0
2,048,646	-		PP_1821	0.81	-1.5
2,048,651	+		PP_1821	0.82	+0.9
2,048,651	+		PP_1821	0.82	-1.5
2,048,651	+		PP_1821	0.82	+0.1
2,048,651	+		PP_1821	0.82	+0.6
2,048,652	-		PP_1821	0.82	+0.4
2,048,652	-		PP_1821	0.82	-1.1
2,048,694	-		PP_1821	0.89	+0.1
2,048,929	-				+0.2
2,048,952	+		PP_1822	0.14	-1.3
2,048,952	+		PP_1822	0.14	+0.1
2,048,952	+		PP_1822	0.14	+0.1
2,048,952	+		PP_1822	0.14	+0.5
2,048,952	+		PP_1822	0.14	+0.9
2,048,952	+		PP_1822	0.14	-0.3
2,048,953	-		PP_1822	0.14	-0.1
2,048,953	-		PP_1822	0.14	-0.4
2,048,953	-		PP_1822	0.14	-0.5
2,048,953	-		PP_1822	0.14	+0.7