Strain Fitness in Pseudomonas putida KT2440 around PP_1346

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
1,534,559	+				+0.6
1,534,559	+				+1.9
1,534,700	+				+1.9
1,534,819	+				-2.8
1,534,819	+				-1.8
1,534,819	+				+0.2
1,534,820	-				-0.6
1,534,820	-				-1.5
1,534,827	-				+0.6
1,534,827	-				+1.2
1,534,980	-				-0.3
1,534,980	-				-0.9
1,534,990	+				-0.1
1,534,990	+				+0.4
1,534,990	+				-0.0
1,534,990	+				-0.4
1,535,188	+		PP_1346	0.16	-0.7
1,535,188	+		PP_1346	0.16	-0.2
1,535,189	-		PP_1346	0.16	-2.6
1,535,206	-		PP_1346	0.18	-0.7
1,535,603	-		PP_1346	0.50	-1.9
1,536,016	-		PP_1346	0.84	-0.8
1,536,063	+		PP_1346	0.88	-1.1
1,536,064	-		PP_1346	0.88	-1.9
1,536,064	-		PP_1346	0.88	+0.4
1,536,064	-		PP_1346	0.88	-1.3
1,536,066	-		PP_1346	0.88	-1.3
1,536,177	+				-1.0
1,536,177	+				-1.6
1,536,178	-				+0.5
1,536,203	+				+0.4
1,536,204	-				-1.6
1,536,204	-				+0.3
1,536,204	-				-1.4
1,536,204	-				-0.6
1,536,212	+				-0.3
1,536,212	+				-1.1
1,536,213	-				-1.1
1,536,290	+				+0.3
1,536,371	+				+0.6
1,536,371	+				-1.9
1,536,372	-				-1.8
1,536,372	-				-1.5
1,536,372	-				-1.4
1,536,398	+				+0.1
1,536,399	-				-2.0
1,536,453	-		PP_1347	0.14	-3.1
1,536,453	-		PP_1347	0.14	-2.6
1,536,773	-		PP_1347	0.64	+1.9
1,536,898	-		PP_1347	0.84	+0.6
1,536,923	+		PP_1347	0.88	-0.9
1,536,923	+		PP_1347	0.88	+0.9
1,536,924	-		PP_1347	0.88	-0.3
1,536,924	-		PP_1347	0.88	+0.5
1,536,924	-		PP_1347	0.88	+0.0
1,536,924	-		PP_1347	0.88	-0.2
1,536,924	-		PP_1347	0.88	-0.1
1,536,938	+				-1.7
1,536,939	-				-1.1
1,536,939	-				+0.6
1,536,988	+				-1.3
1,536,989	-				-1.9
1,536,989	-				-1.0
1,537,010	+				+1.5
1,537,010	+				-0.5
1,537,011	-				-0.8
1,537,011	-				+0.8
1,537,013	+				+0.3
1,537,178	+		PP_1348	0.19	+0.2