Strain Fitness in Pseudomonas putida KT2440 around PP_1236

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
1,412,950	+		PP_1234	0.59	-1.0
1,412,950	+		PP_1234	0.59	-0.1
1,412,950	+		PP_1234	0.59	-0.9
1,412,950	+		PP_1234	0.59	-0.4
1,412,950	+		PP_1234	0.59	+0.5
1,412,950	+		PP_1234	0.59	-1.1
1,412,951	-		PP_1234	0.59	+0.0
1,412,998	+		PP_1234	0.64	-0.7
1,412,998	+		PP_1234	0.64	-1.5
1,412,998	+		PP_1234	0.64	-1.7
1,412,998	+		PP_1234	0.64	+0.8
1,412,999	-		PP_1234	0.64	+0.4
1,412,999	-		PP_1234	0.64	-0.3
1,412,999	-		PP_1234	0.64	-0.1
1,413,029	-		PP_1234	0.66	+1.0
1,413,029	-		PP_1234	0.66	+0.5
1,413,038	+		PP_1234	0.67	-1.4
1,413,039	-		PP_1234	0.67	-0.0
1,413,039	-		PP_1234	0.67	+0.3
1,413,076	+		PP_1234	0.71	+0.2
1,413,076	+		PP_1234	0.71	-0.4
1,413,076	+		PP_1234	0.71	-0.1
1,413,076	+		PP_1234	0.71	+0.4
1,413,077	-		PP_1234	0.71	-0.3
1,413,077	-		PP_1234	0.71	-0.1
1,413,154	+		PP_1234	0.78	-1.0
1,413,154	+		PP_1234	0.78	+0.2
1,413,154	+		PP_1234	0.78	-2.5
1,413,169	+		PP_1234	0.80	+0.9
1,413,252	+		PP_1234	0.87	+0.4
1,413,281	+				+1.0
1,413,391	+				-0.3
1,413,391	+				+0.8
1,413,392	-				-0.7
1,413,457	-				-0.1
1,413,457	-				-1.7
1,413,553	+		PP_1235	0.27	-0.7
1,413,553	+		PP_1235	0.27	-0.6
1,413,553	+		PP_1235	0.27	+1.9
1,413,553	+		PP_1235	0.27	+0.1
1,413,700	-		PP_1235	0.58	+0.1
1,413,787	+		PP_1235	0.77	-1.5
1,413,788	-		PP_1235	0.77	+0.6
1,413,793	+		PP_1235	0.78	+0.7
1,413,793	+		PP_1235	0.78	+1.8
1,413,793	+		PP_1235	0.78	+0.5
1,413,793	+		PP_1235	0.78	+0.6
1,413,889	-				-0.4
1,413,889	-				+0.6
1,413,909	+				-0.3
1,413,909	+				+1.0
1,413,909	+				-0.0
1,413,910	-				+0.3
1,413,910	-				+0.0
1,413,910	-				-0.3
1,413,910	-				+0.1
1,413,910	-				-0.2
1,413,910	-				+0.7
1,413,910	-				+0.0
1,413,914	-				-0.2
1,413,914	-				+0.5
1,413,914	-				+0.0
1,414,071	+		PP_1236	0.29	+0.0
1,414,072	-		PP_1236	0.29	+0.2
1,414,072	-		PP_1236	0.29	+0.1
1,414,176	+		PP_1236	0.48	+3.2
1,414,176	+		PP_1236	0.48	+0.5
1,414,176	+		PP_1236	0.48	-0.9
1,414,176	+		PP_1236	0.48	+0.2
1,414,176	+		PP_1236	0.48	+0.4
1,414,177	-		PP_1236	0.48	-1.1
1,414,690	+				+0.9
1,414,725	+				+1.5
1,414,725	+				+1.5
1,414,725	+				+2.5
1,414,742	+				+1.5
1,414,742	+				+2.5
1,415,082	+		PP_1237	0.40	+2.5
1,415,150	+		PP_1237	0.48	-0.5