Strain Fitness in Pseudomonas putida KT2440 around PP_1162

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
1,335,632	+		PP_1160	0.81	-0.2
1,335,632	+		PP_1160	0.81	+0.1
1,335,633	-		PP_1160	0.82	-1.2
1,335,653	+		PP_1160	0.84	-1.9
1,335,653	+		PP_1160	0.84	-0.4
1,335,654	-		PP_1160	0.84	-0.2
1,335,670	-		PP_1160	0.85	-0.4
1,335,714	+		PP_1160	0.90	-1.3
1,335,715	-		PP_1160	0.90	-1.1
1,335,770	-				+0.1
1,335,869	+		PP_1161	0.12	+0.8
1,335,918	-		PP_1161	0.19	-0.1
1,335,948	-		PP_1161	0.24	+0.4
1,335,965	-		PP_1161	0.26	+0.6
1,335,976	+		PP_1161	0.28	+0.2
1,335,976	+		PP_1161	0.28	-0.5
1,336,120	+		PP_1161	0.50	-1.7
1,336,121	-		PP_1161	0.50	-0.9
1,336,121	-		PP_1161	0.50	-0.0
1,336,142	-		PP_1161	0.53	-0.8
1,336,142	-		PP_1161	0.53	-0.6
1,336,259	-		PP_1161	0.70	+0.1
1,336,334	+		PP_1161	0.81	+1.7
1,336,334	+		PP_1161	0.81	+0.3
1,336,350	+		PP_1161	0.84	-1.9
1,336,432	+				-0.5
1,336,649	+				+0.3
1,336,650	-				-0.1
1,336,650	-				-1.1
1,336,650	-				-0.2
1,336,701	+		PP_1162	0.12	+0.0
1,336,850	+		PP_1162	0.35	-0.2
1,336,851	-		PP_1162	0.35	+0.2
1,336,851	-		PP_1162	0.35	+0.6
1,336,866	-		PP_1162	0.38	-0.5
1,336,877	-		PP_1162	0.40	-1.0
1,337,003	-		PP_1162	0.60	+0.5
1,337,065	+		PP_1162	0.69	-0.2
1,337,066	-		PP_1162	0.70	+0.1
1,337,066	-		PP_1162	0.70	-1.5
1,337,066	-		PP_1162	0.70	+2.5
1,337,097	+		PP_1162	0.74	+0.6
1,337,114	+		PP_1162	0.77	+0.6
1,337,115	-		PP_1162	0.77	-0.9
1,337,115	-		PP_1162	0.77	+0.4
1,337,115	-		PP_1162	0.77	-1.0
1,337,115	-		PP_1162	0.77	-1.3
1,337,120	+		PP_1162	0.78	-0.5
1,337,120	+		PP_1162	0.78	-0.1
1,337,120	+		PP_1162	0.78	+0.1
1,337,121	-		PP_1162	0.78	+1.2
1,337,162	+		PP_1162	0.85	+0.5
1,337,359	-				-0.2
1,337,359	-				-0.1
1,337,429	+				-0.1
1,337,430	-				+0.3
1,337,517	+				+2.5
1,337,517	+		PP_1163	0.11	+0.4
1,337,518	-		PP_1163	0.11	+0.1
1,337,518	-		PP_1163	0.11	-0.6
1,337,536	+		PP_1163	0.12	-0.8
1,337,536	+		PP_1163	0.12	-1.8
1,337,536	+		PP_1163	0.12	-0.5
1,337,536	+		PP_1163	0.12	+0.3
1,337,536	+		PP_1163	0.12	-1.3
1,337,536	+		PP_1163	0.12	+0.0
1,337,537	-		PP_1163	0.12	+1.0
1,337,700	+		PP_1163	0.20	-0.3
1,337,729	+		PP_1163	0.22	-0.3
1,337,730	-		PP_1163	0.22	-0.3
1,337,747	+		PP_1163	0.23	-1.1
1,337,747	+		PP_1163	0.23	-0.8
1,337,747	+		PP_1163	0.23	-1.2
1,337,801	-		PP_1163	0.25	-1.9
1,337,833	+		PP_1163	0.27	+1.3
1,337,834	-		PP_1163	0.27	-1.4
1,337,852	+		PP_1163	0.28	-1.3
1,337,852	+		PP_1163	0.28	+1.2
1,337,852	+		PP_1163	0.28	-0.1
1,337,853	-		PP_1163	0.28	+0.4
1,337,954	+		PP_1163	0.33	-1.0
1,337,954	+		PP_1163	0.33	-0.9
1,338,057	-		PP_1163	0.38	-2.0
1,338,218	-		PP_1163	0.46	-0.3