Experiment: L-Phenylalanine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0426 and PP_0427 are separated by 10 nucleotides PP_0427 and PP_0428 are separated by 65 nucleotides PP_0428 and PP_0429 are separated by 63 nucleotides PP_0429 and PP_0430 are separated by 67 nucleotides
PP_0426: PP_0426 - conserved membrane protein of unknown function, at 514,043 to 515,083
_0426
PP_0427: PP_0427 - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 515,094 to 515,741
_0427
PP_0428: PP_0428 - aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase, at 515,807 to 516,145
_0428
PP_0429: PP_0429 - Oxidoreductase, short chain dehydrogenase/reductase family, at 516,209 to 516,991
_0429
PP_0430: PP_0430 - conserved protein of unknown function, at 517,059 to 518,015
_0430
Position (kb) 515
516
517 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 514.837 kb on + strand, within PP_0426 at 514.837 kb on + strand, within PP_0426 at 514.839 kb on + strand, within PP_0426 at 514.839 kb on + strand, within PP_0426 at 514.839 kb on + strand, within PP_0426 at 514.839 kb on + strand, within PP_0426 at 514.839 kb on + strand, within PP_0426 at 514.839 kb on + strand, within PP_0426 at 514.840 kb on - strand, within PP_0426 at 514.840 kb on - strand, within PP_0426 at 514.840 kb on - strand, within PP_0426 at 514.840 kb on - strand, within PP_0426 at 514.938 kb on + strand, within PP_0426 at 514.938 kb on + strand, within PP_0426 at 514.938 kb on + strand, within PP_0426 at 514.939 kb on - strand, within PP_0426 at 514.939 kb on - strand, within PP_0426 at 514.939 kb on - strand, within PP_0426 at 515.723 kb on - strand at 515.774 kb on + strand at 515.782 kb on + strand at 515.851 kb on + strand, within PP_0428 at 515.851 kb on + strand, within PP_0428 at 515.851 kb on + strand, within PP_0428 at 515.851 kb on + strand, within PP_0428 at 515.851 kb on + strand, within PP_0428 at 515.852 kb on - strand, within PP_0428 at 515.852 kb on - strand, within PP_0428 at 515.852 kb on - strand, within PP_0428 at 515.852 kb on - strand, within PP_0428 at 515.863 kb on - strand, within PP_0428 at 516.090 kb on + strand, within PP_0428 at 516.090 kb on + strand, within PP_0428 at 516.090 kb on + strand, within PP_0428 at 516.090 kb on + strand, within PP_0428 at 516.090 kb on + strand, within PP_0428 at 516.091 kb on - strand, within PP_0428 at 516.091 kb on - strand, within PP_0428 at 516.091 kb on - strand, within PP_0428 at 516.091 kb on - strand, within PP_0428 at 516.097 kb on + strand, within PP_0428 at 516.097 kb on + strand, within PP_0428 at 516.097 kb on + strand, within PP_0428 at 516.097 kb on + strand, within PP_0428 at 516.097 kb on + strand, within PP_0428 at 516.098 kb on - strand, within PP_0428 at 516.098 kb on - strand, within PP_0428 at 516.098 kb on - strand, within PP_0428 at 516.098 kb on - strand, within PP_0428 at 516.098 kb on - strand, within PP_0428 at 516.134 kb on + strand at 516.135 kb on - strand at 516.135 kb on - strand at 516.181 kb on - strand at 516.210 kb on + strand at 516.210 kb on + strand at 516.520 kb on - strand, within PP_0429 at 516.608 kb on + strand, within PP_0429 at 516.608 kb on + strand, within PP_0429 at 516.608 kb on + strand, within PP_0429 at 516.609 kb on - strand, within PP_0429 at 516.714 kb on + strand, within PP_0429 at 516.714 kb on + strand, within PP_0429 at 516.714 kb on + strand, within PP_0429 at 516.714 kb on + strand, within PP_0429 at 516.714 kb on + strand, within PP_0429 at 516.715 kb on - strand, within PP_0429 at 516.715 kb on - strand, within PP_0429 at 516.715 kb on - strand, within PP_0429 at 516.715 kb on - strand, within PP_0429 at 516.776 kb on + strand, within PP_0429 at 516.777 kb on - strand, within PP_0429 at 516.777 kb on - strand, within PP_0429 at 517.022 kb on + strand at 517.022 kb on + strand at 517.023 kb on - strand at 517.027 kb on + strand at 517.027 kb on + strand at 517.028 kb on - strand at 517.028 kb on - strand at 517.028 kb on - strand at 517.028 kb on - strand at 517.060 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine 5 mM (C) remove 514,837 + PP_0426 0.76 +0.4 514,837 + PP_0426 0.76 +1.3 514,839 + PP_0426 0.76 -1.0 514,839 + PP_0426 0.76 -0.6 514,839 + PP_0426 0.76 -0.1 514,839 + PP_0426 0.76 -0.4 514,839 + PP_0426 0.76 +0.2 514,839 + PP_0426 0.76 -0.7 514,840 - PP_0426 0.77 +0.9 514,840 - PP_0426 0.77 -0.2 514,840 - PP_0426 0.77 -0.0 514,840 - PP_0426 0.77 +0.3 514,938 + PP_0426 0.86 -0.2 514,938 + PP_0426 0.86 -1.6 514,938 + PP_0426 0.86 -0.1 514,939 - PP_0426 0.86 +0.5 514,939 - PP_0426 0.86 -2.9 514,939 - PP_0426 0.86 +1.5 515,723 - +1.5 515,774 + +1.5 515,782 + +1.6 515,851 + PP_0428 0.13 -0.3 515,851 + PP_0428 0.13 +0.2 515,851 + PP_0428 0.13 +0.1 515,851 + PP_0428 0.13 -0.7 515,851 + PP_0428 0.13 +1.2 515,852 - PP_0428 0.13 +0.0 515,852 - PP_0428 0.13 +0.0 515,852 - PP_0428 0.13 -0.2 515,852 - PP_0428 0.13 +0.9 515,863 - PP_0428 0.17 -0.1 516,090 + PP_0428 0.83 -0.4 516,090 + PP_0428 0.83 -1.1 516,090 + PP_0428 0.83 -1.7 516,090 + PP_0428 0.83 +0.9 516,090 + PP_0428 0.83 +0.9 516,091 - PP_0428 0.84 +1.2 516,091 - PP_0428 0.84 -0.9 516,091 - PP_0428 0.84 -0.5 516,091 - PP_0428 0.84 -1.2 516,097 + PP_0428 0.86 +0.2 516,097 + PP_0428 0.86 -0.8 516,097 + PP_0428 0.86 -1.6 516,097 + PP_0428 0.86 +0.7 516,097 + PP_0428 0.86 +0.4 516,098 - PP_0428 0.86 -0.0 516,098 - PP_0428 0.86 +0.9 516,098 - PP_0428 0.86 +1.1 516,098 - PP_0428 0.86 -1.0 516,098 - PP_0428 0.86 -1.8 516,134 + -1.3 516,135 - -0.2 516,135 - -0.4 516,181 - -0.4 516,210 + -0.6 516,210 + +1.9 516,520 - PP_0429 0.40 -0.1 516,608 + PP_0429 0.51 +0.6 516,608 + PP_0429 0.51 +0.7 516,608 + PP_0429 0.51 -0.7 516,609 - PP_0429 0.51 +0.5 516,714 + PP_0429 0.64 +1.7 516,714 + PP_0429 0.64 -1.1 516,714 + PP_0429 0.64 -0.9 516,714 + PP_0429 0.64 +0.2 516,714 + PP_0429 0.64 -1.2 516,715 - PP_0429 0.65 +0.1 516,715 - PP_0429 0.65 -1.3 516,715 - PP_0429 0.65 -0.4 516,715 - PP_0429 0.65 -1.0 516,776 + PP_0429 0.72 +0.1 516,777 - PP_0429 0.73 +0.1 516,777 - PP_0429 0.73 +0.3 517,022 + +0.7 517,022 + -0.5 517,023 - +0.0 517,027 + +0.0 517,027 + +1.6 517,028 - +0.7 517,028 - -0.0 517,028 - +0.6 517,028 - +0.1 517,060 + -0.5
Or see this region's nucleotide sequence