Strain Fitness in Pseudomonas putida KT2440 around PP_0356

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
432,105	+		PP_0354	0.89	-1.5
432,105	+		PP_0354	0.89	+0.1
432,105	+		PP_0354	0.89	-0.9
432,106	-		PP_0354	0.89	-0.2
432,106	-		PP_0354	0.89	-0.1
432,159	+				+0.1
432,160	-				+0.6
432,160	-				+0.8
432,344	-				-0.3
432,345	+				-0.8
432,345	+				-1.6
432,346	-				+0.2
432,346	-				-0.7
432,346	-				+1.0
432,346	-				+0.2
432,347	+				-1.7
432,347	+				-0.2
432,347	+				-0.9
432,347	+				-1.5
432,348	-				+1.2
432,348	-				+0.3
432,348	-				-0.6
432,351	+				-0.5
432,351	+				-0.8
432,351	+				-1.7
432,351	+				-1.8
432,352	-				+1.2
432,352	-				-1.6
432,354	-				-0.7
432,354	-				+0.6
432,355	+				-1.0
432,356	-				-0.1
432,357	+				-0.6
432,357	+				-0.9
432,357	+				-1.4
432,423	+				-1.1
432,423	+				-0.6
432,423	+				-0.7
432,424	-				+0.9
432,424	-				+0.5
432,424	-				-0.6
432,429	+				-1.8
432,429	+				-0.3
432,430	-				-1.0
432,430	-				-0.1
432,430	-				-1.9
432,491	+		PP_0355	0.15	-2.0
432,491	+		PP_0355	0.15	-1.6
432,491	+		PP_0355	0.15	-1.2
432,492	-		PP_0355	0.15	+0.1
432,724	+		PP_0355	0.56	+0.3
432,725	-		PP_0355	0.56	+0.6
432,733	+		PP_0355	0.57	+0.8
432,734	-		PP_0355	0.58	+1.5
432,744	+		PP_0355	0.59	+1.1
432,745	-		PP_0355	0.59	-0.3
432,759	+		PP_0355	0.62	-0.9
432,993	-				+0.4
432,993	-				-0.1
433,023	+				+1.3
433,023	+				+0.1
433,023	+				+0.3
433,023	+				-0.6
433,023	+				-1.3
433,023	+				+0.2
433,024	-				+0.9
433,024	-				-1.9
433,024	-				+2.8
433,024	-				+1.0
433,110	-				+0.9
433,110	-				-0.5
433,171	-				+0.5
433,526	+		PP_0356	0.23	-0.3
433,527	-		PP_0356	0.23	+0.2
433,543	-		PP_0356	0.24	+0.5
433,894	+		PP_0356	0.40	-0.7
434,025	+		PP_0356	0.46	-0.1
434,025	+		PP_0356	0.46	+0.2
434,025	+		PP_0356	0.46	+2.5
434,025	+		PP_0356	0.46	+0.1
434,026	-		PP_0356	0.46	-0.9
434,026	-		PP_0356	0.46	-1.1
434,026	-		PP_0356	0.46	+0.5
434,113	+		PP_0356	0.50	-0.1
434,113	+		PP_0356	0.50	-0.1
434,114	-		PP_0356	0.50	+1.5
434,360	+		PP_0356	0.61	+0.5
434,721	+		PP_0356	0.78	+0.2
434,721	+		PP_0356	0.78	-0.5
434,722	-		PP_0356	0.78	-0.7
434,772	+		PP_0356	0.80	+0.5
434,784	+		PP_0356	0.81	-0.8
435,150	+				+1.5
435,151	-				+1.5
435,151	-				-0.5
435,190	-				-0.3
435,190	-				-0.5
435,223	-				-0.3
435,237	+				+0.5
435,237	+				-1.4
435,237	+				+0.5
435,237	+				-0.8
435,237	+				-0.7
435,237	+				-1.1
435,238	-				+3.5
435,238	-				+0.8
435,238	-				+0.3
435,238	-				+1.1
435,238	-				-0.3
435,240	+				-0.7
435,240	+				+0.9
435,240	+				+0.9
435,241	-				+1.5
435,241	-				-0.4
435,248	+				-0.8
435,259	+				+0.5
435,343	+				+2.5
435,344	-				-3.0
435,405	+				+0.2
435,405	+				-1.7
435,405	+				-0.5
435,405	+				-0.7
435,405	+				-0.3
435,406	-				-0.4
435,406	-				+1.1
435,437	+				+0.2
435,438	-				-0.5
435,449	+				+0.3
435,470	-				+0.3
435,470	-				-0.4
435,486	+				-1.2
435,490	+				-0.7
435,490	+				-0.7
435,588	+				-0.7
435,589	-				-1.6
435,589	-				+0.9
435,589	-				+1.0
435,590	+				+0.7
435,590	+				-0.8
435,662	+				-0.1
435,663	-				+0.4
435,663	-				+0.5
435,671	+				-0.7
435,671	+				+0.2
435,672	-				-0.5
435,672	-				-1.7
435,672	-				-0.0
435,672	-				-0.3
435,705	+		PP_0357	0.11	-0.5
435,706	-		PP_0357	0.11	+0.7
435,706	-		PP_0357	0.11	-0.2
435,706	-		PP_0357	0.11	-2.2
435,735	+		PP_0357	0.17	-0.5
435,815	-		PP_0357	0.32	+0.5
435,853	+		PP_0357	0.39	-0.1
435,853	+		PP_0357	0.39	-2.4
435,854	-		PP_0357	0.39	-0.2
435,989	+		PP_0357	0.66	-0.5
435,989	+		PP_0357	0.66	-0.0