Strain Fitness in Pseudomonas putida KT2440 around PP_0084

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
92,716	+		PP_0083	0.28	+0.5
92,717	-		PP_0083	0.28	+2.5
92,717	-		PP_0083	0.28	+2.5
92,717	-		PP_0083	0.28	+1.5
92,717	-		PP_0083	0.28	+0.9
92,745	+		PP_0083	0.30	+0.9
92,785	-		PP_0083	0.34	+0.5
92,785	-		PP_0083	0.34	+0.9
93,013	+		PP_0083	0.52	+2.5
93,014	-		PP_0083	0.52	+0.9
93,014	-		PP_0083	0.52	+1.5
93,172	+		PP_0083	0.65	+1.5
93,172	+		PP_0083	0.65	+1.5
93,173	-		PP_0083	0.65	-0.1
93,173	-		PP_0083	0.65	+2.5
93,173	-		PP_0083	0.65	+0.2
93,394	+		PP_0083	0.84	+1.5
93,394	+				+2.5
93,434	-		PP_0083	0.87	+0.9
93,526	+				+0.2
93,526	+				+2.5
93,577	+				+1.5
93,610	+				+2.5
93,611	-				-1.5
93,631	+				-0.7
93,631	+				+0.9
93,631	+				+2.5
93,631	+				+2.5
93,632	-				+0.3
93,636	+				+1.5
94,031	-		PP_0084	0.36	+0.2
94,142	+		PP_0084	0.49	-0.4
94,142	+		PP_0084	0.49	-0.3
94,143	-		PP_0084	0.49	+0.2
94,143	-		PP_0084	0.49	-0.5
94,358	+		PP_0084	0.73	-1.5
94,358	+		PP_0084	0.73	-1.7
94,358	+		PP_0084	0.73	-3.0
94,382	+		PP_0084	0.76	-0.9
94,383	-		PP_0084	0.76	-0.2
94,383	-		PP_0084	0.76	-0.8
94,383	-		PP_0084	0.76	-0.6
94,383	-		PP_0084	0.76	-1.0
94,383	-		PP_0084	0.76	-0.4
94,383	-		PP_0084	0.76	+0.5
94,385	+		PP_0084	0.76	-1.6
94,386	-		PP_0084	0.76	-0.9
94,386	-		PP_0084	0.76	+0.3
94,386	-		PP_0084	0.76	-0.3
94,386	-		PP_0084	0.76	-1.6
94,495	+		PP_0084	0.88	-2.5
94,496	-		PP_0084	0.88	-1.9
94,599	-				-1.3
94,612	+				-0.8
94,613	-				+0.5
94,619	+				+0.4
94,667	+		PP_0085	0.14	+0.7
94,667	+		PP_0085	0.14	+0.0
94,667	+		PP_0085	0.14	-1.3
94,667	+		PP_0085	0.14	+0.5
94,668	-		PP_0085	0.15	+0.3
94,668	-		PP_0085	0.15	+0.2
94,736	+		PP_0085	0.28	+0.7
94,737	-		PP_0085	0.29	-1.2
94,750	+		PP_0085	0.31	+0.2
94,900	-		PP_0085	0.62	-0.4
94,900	-		PP_0085	0.62	-1.0
94,939	+		PP_0085	0.70	-1.7
94,940	-		PP_0085	0.70	+1.5
94,940	-		PP_0085	0.70	+0.6
95,016	+		PP_0085	0.86	+0.2
95,017	-		PP_0085	0.86	+0.4
95,035	+		PP_0085	0.90	+0.0
95,036	-		PP_0085	0.90	+0.8
95,089	+				+0.3
95,090	-				-0.4
95,142	+		PP_0086	0.33	+1.0
95,142	+		PP_0086	0.33	+0.6
95,142	+		PP_0086	0.33	-1.2
95,280	+				+0.0
95,280	+				-0.4
95,280	+				-0.3
95,302	+				-0.5
95,303	-				+1.5
95,303	-				-1.7
95,303	-				-0.7
95,303	-				-0.9
95,303	-				-0.1
95,323	+				-0.1
95,324	-				-2.0
95,514	-		PP_0087	0.64	-0.7
95,563	+		PP_0087	0.83	+0.0
95,563	+		PP_0087	0.83	+0.2
95,564	-		PP_0087	0.83	-0.5