Strain Fitness in Pseudomonas putida KT2440 around PP_5670

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
4,855,244	+				+0.5
4,855,244	+				-0.5
4,855,245	-				+1.0
4,855,326	-		PP_4270	0.13	+0.4
4,855,363	+		PP_4270	0.17	+0.7
4,855,364	-		PP_4270	0.18	-0.0
4,855,477	+		PP_4270	0.32	-0.4
4,855,477	+		PP_4270	0.32	+1.3
4,855,478	-		PP_4270	0.32	+1.0
4,855,478	-		PP_4270	0.32	-0.4
4,855,527	+		PP_4270	0.38	+1.3
4,855,527	+		PP_4270	0.38	-0.5
4,855,527	+		PP_4270	0.38	+0.9
4,855,554	-		PP_4270	0.41	-0.1
4,855,554	-		PP_4270	0.41	-0.4
4,855,633	+		PP_4270	0.51	+0.1
4,855,639	+		PP_4270	0.52	-1.5
4,855,639	+		PP_4270	0.52	+0.7
4,855,639	+		PP_4270	0.52	+0.9
4,855,639	+		PP_4270	0.52	-1.1
4,855,639	+		PP_4270	0.52	-0.9
4,855,639	+		PP_4270	0.52	-0.2
4,855,639	+		PP_4270	0.52	+1.0
4,855,640	-		PP_4270	0.52	+0.1
4,855,640	-		PP_4270	0.52	-0.6
4,855,640	-		PP_4270	0.52	+1.9
4,855,640	-		PP_4270	0.52	-1.1
4,855,898	+		PP_4270	0.84	-0.4
4,855,898	+		PP_4270	0.84	-0.4
4,855,898	+		PP_4270	0.84	+0.3
4,855,922	+		PP_4270	0.87	-0.1
4,855,922	+		PP_4270	0.87	-0.7
4,855,922	+		PP_4270	0.87	-0.6
4,855,923	-		PP_4270	0.87	-0.2
4,855,968	+				-0.2
4,855,968	+				+0.2
4,855,968	+				+0.5
4,855,968	+				-1.1
4,855,968	+				-2.4
4,855,968	+				+0.2
4,855,968	+				+1.1
4,855,968	+				+0.8
4,855,968	+				-1.0
4,855,968	+				-0.3
4,855,969	-				+0.7
4,855,969	-				+0.4
4,855,969	-				+0.3
4,855,969	-				-0.8
4,855,969	-				-0.4
4,855,969	-				-0.8
4,855,969	-				+0.2
4,855,969	-				+0.1
4,855,969	-				+0.2
4,855,969	-				-0.5
4,855,969	-				+0.6
4,855,991	+				-0.3
4,855,992	-				+0.6
4,856,026	+				-0.4
4,856,151	+				+0.5
4,856,152	-				-0.2
4,856,153	+				+0.5
4,856,153	+				+0.5
4,856,154	-				+0.1
4,856,154	-				-1.1
4,856,154	-				-0.7
4,856,154	-				-0.7
4,856,209	-				+0.3
4,856,236	-				+0.6
4,856,308	+		PP_5670	0.30	+1.0
4,856,308	+		PP_5670	0.30	+0.3
4,856,309	-		PP_5670	0.31	+0.6
4,856,309	-		PP_5670	0.31	+0.5
4,856,334	+		PP_5670	0.40	-0.4
4,856,334	+		PP_5670	0.40	+2.1
4,856,364	-		PP_5670	0.51	+0.4
4,856,364	-		PP_5670	0.51	+0.6
4,856,378	+		PP_5670	0.56	-1.6
4,856,521	+				-0.6
4,856,521	+				-0.2
4,856,544	+				+0.5
4,856,544	+				+1.5
4,856,544	+				-0.4
4,856,545	-				-0.5
4,856,558	+				-0.9
4,856,559	-				+0.5
4,856,628	-				-0.0
4,856,695	+				-0.4
4,856,696	-				+2.0
4,856,744	+				-0.4
4,856,749	+				+1.4
4,856,750	-				-1.4
4,856,757	+				+0.3
4,856,759	+				-0.6
4,856,760	-				+0.1
4,856,760	-				+0.8
4,856,763	+				-1.5
4,856,763	+				-1.1
4,856,764	-				+0.3
4,856,764	-				-0.9
4,856,764	-				+0.1
4,856,774	+				+0.4
4,856,774	+				-1.8
4,856,775	-				+1.3
4,856,794	+				+0.3
4,856,795	-				-0.9
4,856,808	-				-1.6
4,856,828	+				-0.5
4,856,828	+				-1.2
4,856,828	+				+0.2
4,856,829	-				-2.0
4,856,829	-				-0.1
4,856,829	-				+1.4
4,856,829	-				+0.2
4,856,829	-				+0.1
4,856,856	+				+0.1
4,856,857	-				+1.0
4,856,857	-				+0.2
4,856,857	-				+0.7
4,856,857	-				+0.8
4,856,945	+				-0.2
4,857,054	+		PP_5671	0.50	+1.4
4,857,055	-		PP_5671	0.51	+0.4
4,857,116	+		PP_5671	0.82	+0.0
4,857,116	+		PP_5671	0.82	-0.3
4,857,116	+		PP_5671	0.82	-0.3
4,857,116	+		PP_5671	0.82	+0.3
4,857,117	-		PP_5671	0.83	+0.6
4,857,117	-				+2.1
4,857,117	-		PP_5671	0.83	-1.4
4,857,117	-		PP_5671	0.83	-1.1
4,857,117	-		PP_5671	0.83	+1.0
4,857,117	-		PP_5671	0.83	+0.4
4,857,117	-		PP_5671	0.83	+0.6
4,857,159	+				+0.9
4,857,160	-				+0.5
4,857,177	+				+0.7
4,857,177	+				+0.4
4,857,178	-				-0.8
4,857,323	-		PP_4271	0.78	+0.3
4,857,384	+				+0.1
4,857,385	-				+0.1
4,857,385	-				+0.1
4,857,393	+				-0.5
4,857,393	+				+0.2
4,857,459	-		PP_4272	0.15	+0.4