Strain Fitness in Pseudomonas putida KT2440 around PP_5541

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
3,342,605	-		PP_2939	0.62	+0.2
3,342,619	+		PP_2939	0.67	-0.0
3,342,671	+		PP_2939	0.87	-0.3
3,342,671	+		PP_2939	0.87	-1.2
3,342,671	+				+0.4
3,342,672	-		PP_2939	0.88	+0.7
3,342,706	+				-0.2
3,342,706	+				-0.0
3,342,706	+				+0.0
3,342,706	+				-0.7
3,342,707	-				-1.2
3,342,707	-				-0.1
3,342,707	-				-0.7
3,343,226	-				-0.1
3,343,269	+				-0.3
3,343,269	+				-0.6
3,343,270	-				-0.0
3,343,302	+				+0.4
3,343,303	-				+0.4
3,343,338	-				+0.2
3,343,339	+				-0.5
3,343,340	-				-1.3
3,343,486	+				-0.8
3,343,486	+				-0.0
3,343,504	-				-0.0
3,343,525	+				-0.1
3,343,525	+				+0.5
3,343,555	-				+0.1
3,343,586	+				+0.0
3,343,659	-		PP_5541	0.18	+1.4
3,343,741	+		PP_5541	0.43	+0.6
3,343,741	+		PP_5541	0.43	+1.2
3,343,746	-		PP_5541	0.45	+0.3
3,343,779	+		PP_5541	0.55	+0.4
3,343,780	-		PP_5541	0.55	+0.5
3,343,780	-		PP_5541	0.55	+0.1
3,343,780	-		PP_5541	0.55	-2.7
3,343,970	+				-1.0
3,343,970	+				+0.4
3,343,971	-				+1.4
3,344,045	-		PP_5542	0.16	-0.7
3,344,045	-		PP_5542	0.16	-0.3
3,344,056	+		PP_5542	0.20	+1.1
3,344,057	-		PP_5542	0.20	-0.6
3,344,066	-		PP_5542	0.24	-0.6
3,344,133	-		PP_5542	0.49	+0.0
3,344,231	-		PP_5542	0.85	-1.4
3,344,231	-		PP_5542	0.85	-0.3
3,344,410	+				-0.0
3,344,411	-				+0.0
3,344,545	-		PP_2941	0.26	-0.4
3,344,545	-		PP_2941	0.26	+0.0
3,344,656	+		PP_2941	0.40	-0.3
3,344,656	+		PP_2941	0.40	+1.0
3,344,657	-		PP_2941	0.40	+0.5
3,344,657	-		PP_2941	0.40	+0.4
3,344,660	-		PP_2941	0.40	+0.6
3,344,660	-		PP_2941	0.40	-0.2
3,344,698	+		PP_2941	0.45	-0.4
3,344,699	-		PP_2941	0.45	+1.1
3,344,903	-		PP_2941	0.71	-0.6