Experiment: L-Phenylalanine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0348 and PP_5443 are separated by 67 nucleotides PP_5443 and PP_0349 overlap by 4 nucleotides
PP_0348: PP_0348 - conserved protein of unknown function, at 421,161 to 423,947
_0348
PP_5443: PP_5443 - conserved protein of unknown function, at 424,015 to 424,200
_5443
PP_0349: PP_0349 - putative Membrane protein, at 424,197 to 425,309
_0349
Position (kb) 424
425 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 423.078 kb on - strand, within PP_0348 at 423.078 kb on - strand, within PP_0348 at 423.078 kb on - strand, within PP_0348 at 423.101 kb on + strand, within PP_0348 at 423.101 kb on + strand, within PP_0348 at 423.101 kb on + strand, within PP_0348 at 423.101 kb on + strand, within PP_0348 at 423.102 kb on - strand, within PP_0348 at 423.102 kb on - strand, within PP_0348 at 423.102 kb on - strand, within PP_0348 at 423.200 kb on + strand, within PP_0348 at 423.200 kb on + strand, within PP_0348 at 423.200 kb on + strand, within PP_0348 at 423.200 kb on + strand, within PP_0348 at 423.200 kb on + strand, within PP_0348 at 423.201 kb on - strand, within PP_0348 at 423.201 kb on - strand, within PP_0348 at 423.201 kb on - strand, within PP_0348 at 423.204 kb on + strand, within PP_0348 at 423.205 kb on - strand, within PP_0348 at 423.205 kb on - strand, within PP_0348 at 423.276 kb on + strand, within PP_0348 at 423.277 kb on - strand, within PP_0348 at 423.277 kb on - strand, within PP_0348 at 423.277 kb on - strand, within PP_0348 at 423.325 kb on + strand, within PP_0348 at 423.326 kb on - strand, within PP_0348 at 423.326 kb on - strand, within PP_0348 at 423.373 kb on + strand, within PP_0348 at 423.373 kb on + strand, within PP_0348 at 423.568 kb on + strand, within PP_0348 at 423.569 kb on - strand, within PP_0348 at 423.638 kb on + strand, within PP_0348 at 423.638 kb on + strand, within PP_0348 at 423.638 kb on + strand, within PP_0348 at 423.638 kb on + strand, within PP_0348 at 423.639 kb on - strand, within PP_0348 at 423.639 kb on - strand, within PP_0348 at 423.639 kb on - strand, within PP_0348 at 423.639 kb on - strand, within PP_0348 at 423.639 kb on - strand, within PP_0348 at 423.681 kb on + strand at 423.681 kb on + strand at 423.681 kb on + strand at 423.681 kb on + strand at 423.682 kb on - strand at 423.988 kb on + strand at 423.989 kb on - strand at 424.244 kb on - strand at 424.244 kb on - strand at 424.319 kb on - strand, within PP_0349 at 424.363 kb on + strand, within PP_0349 at 424.416 kb on + strand, within PP_0349 at 424.417 kb on - strand, within PP_0349 at 424.472 kb on - strand, within PP_0349 at 424.472 kb on - strand, within PP_0349 at 424.472 kb on - strand, within PP_0349 at 424.674 kb on + strand, within PP_0349 at 424.774 kb on - strand, within PP_0349 at 424.810 kb on + strand, within PP_0349 at 424.810 kb on + strand, within PP_0349 at 424.811 kb on - strand, within PP_0349 at 424.848 kb on + strand, within PP_0349 at 424.848 kb on + strand, within PP_0349 at 424.849 kb on - strand, within PP_0349 at 424.849 kb on - strand, within PP_0349 at 425.179 kb on - strand, within PP_0349
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine 5 mM (C) remove 423,078 - PP_0348 0.69 +0.5 423,078 - PP_0348 0.69 +1.1 423,078 - PP_0348 0.69 -2.9 423,101 + PP_0348 0.70 +0.3 423,101 + PP_0348 0.70 +1.8 423,101 + PP_0348 0.70 -0.0 423,101 + PP_0348 0.70 +0.1 423,102 - PP_0348 0.70 +1.8 423,102 - PP_0348 0.70 +0.3 423,102 - PP_0348 0.70 -0.0 423,200 + PP_0348 0.73 +0.4 423,200 + PP_0348 0.73 +1.2 423,200 + PP_0348 0.73 -1.3 423,200 + PP_0348 0.73 -0.0 423,200 + PP_0348 0.73 -0.7 423,201 - PP_0348 0.73 -0.0 423,201 - PP_0348 0.73 -2.3 423,201 - PP_0348 0.73 +1.6 423,204 + PP_0348 0.73 +1.6 423,205 - PP_0348 0.73 +0.6 423,205 - PP_0348 0.73 +0.1 423,276 + PP_0348 0.76 +0.7 423,277 - PP_0348 0.76 +0.5 423,277 - PP_0348 0.76 -0.3 423,277 - PP_0348 0.76 +0.7 423,325 + PP_0348 0.78 -0.2 423,326 - PP_0348 0.78 -0.7 423,326 - PP_0348 0.78 -0.0 423,373 + PP_0348 0.79 +0.3 423,373 + PP_0348 0.79 -0.2 423,568 + PP_0348 0.86 +0.2 423,569 - PP_0348 0.86 -0.3 423,638 + PP_0348 0.89 -0.2 423,638 + PP_0348 0.89 +1.1 423,638 + PP_0348 0.89 +0.4 423,638 + PP_0348 0.89 +0.2 423,639 - PP_0348 0.89 -0.5 423,639 - PP_0348 0.89 -0.2 423,639 - PP_0348 0.89 +1.1 423,639 - PP_0348 0.89 -0.2 423,639 - PP_0348 0.89 -0.6 423,681 + -0.5 423,681 + -0.1 423,681 + +0.8 423,681 + +0.8 423,682 - +0.1 423,988 + -0.7 423,989 - -0.2 424,244 - -2.0 424,244 - -1.0 424,319 - PP_0349 0.11 +0.1 424,363 + PP_0349 0.15 -0.2 424,416 + PP_0349 0.20 +0.3 424,417 - PP_0349 0.20 +0.0 424,472 - PP_0349 0.25 -0.8 424,472 - PP_0349 0.25 +0.5 424,472 - PP_0349 0.25 +0.6 424,674 + PP_0349 0.43 -0.7 424,774 - PP_0349 0.52 -0.5 424,810 + PP_0349 0.55 +0.0 424,810 + PP_0349 0.55 -1.2 424,811 - PP_0349 0.55 -0.7 424,848 + PP_0349 0.58 -1.0 424,848 + PP_0349 0.58 -1.0 424,849 - PP_0349 0.59 +0.2 424,849 - PP_0349 0.59 -0.2 425,179 - PP_0349 0.88 +0.4
Or see this region's nucleotide sequence