Experiment: L-Phenylalanine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0168 and PP_5431 are separated by 127 nucleotides PP_5431 and PP_0169 are separated by 198 nucleotides
PP_0168: PP_0168 - putative surface adhesion protein, at 194,495 to 220,543
_0168
PP_5431: PP_5431 - conserved protein of unknown function, at 220,671 to 221,030
_5431
PP_0169: PP_0169 - Dioxygenase, TauD/TfdA family, at 221,229 to 222,128
_0169
Position (kb) 220
221
222 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 219.679 kb on - strand at 219.715 kb on + strand at 219.759 kb on - strand at 219.759 kb on - strand at 219.788 kb on - strand at 219.862 kb on + strand at 219.863 kb on - strand at 219.930 kb on - strand at 219.947 kb on + strand at 219.947 kb on + strand at 219.988 kb on + strand at 219.989 kb on - strand at 220.007 kb on + strand at 220.007 kb on + strand at 220.007 kb on + strand at 220.022 kb on + strand at 220.022 kb on + strand at 220.036 kb on + strand at 220.112 kb on - strand at 220.138 kb on + strand at 220.139 kb on - strand at 220.298 kb on - strand at 220.349 kb on + strand at 220.349 kb on + strand at 220.474 kb on + strand at 220.475 kb on - strand at 220.602 kb on + strand at 220.603 kb on - strand at 220.603 kb on - strand at 220.642 kb on - strand at 220.654 kb on - strand at 220.654 kb on - strand at 220.695 kb on + strand at 220.696 kb on - strand at 220.696 kb on - strand at 221.090 kb on - strand at 221.327 kb on - strand, within PP_0169 at 221.327 kb on - strand, within PP_0169 at 221.372 kb on + strand, within PP_0169 at 221.423 kb on + strand, within PP_0169 at 221.423 kb on + strand, within PP_0169 at 221.423 kb on + strand, within PP_0169 at 221.424 kb on - strand, within PP_0169 at 221.470 kb on + strand, within PP_0169 at 221.470 kb on + strand, within PP_0169 at 221.471 kb on - strand, within PP_0169 at 221.471 kb on - strand, within PP_0169 at 221.602 kb on - strand, within PP_0169 at 221.602 kb on - strand, within PP_0169 at 221.687 kb on + strand, within PP_0169 at 221.687 kb on + strand, within PP_0169 at 221.688 kb on + strand, within PP_0169 at 221.688 kb on - strand, within PP_0169 at 221.688 kb on - strand, within PP_0169 at 221.688 kb on - strand, within PP_0169 at 221.704 kb on + strand, within PP_0169 at 221.754 kb on + strand, within PP_0169 at 221.755 kb on - strand, within PP_0169 at 221.755 kb on - strand, within PP_0169 at 221.757 kb on - strand, within PP_0169 at 221.964 kb on + strand, within PP_0169 at 221.964 kb on + strand, within PP_0169 at 221.965 kb on - strand, within PP_0169 at 221.965 kb on - strand, within PP_0169 at 221.965 kb on - strand, within PP_0169 at 221.994 kb on + strand, within PP_0169 at 221.995 kb on - strand, within PP_0169 at 222.016 kb on - strand, within PP_0169 at 222.016 kb on - strand, within PP_0169
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine 5 mM (C) remove 219,679 - -0.5 219,715 + +0.2 219,759 - +0.5 219,759 - +0.3 219,788 - +2.4 219,862 + -1.0 219,863 - +1.2 219,930 - +1.3 219,947 + -1.1 219,947 + -0.5 219,988 + +0.9 219,989 - +0.9 220,007 + +0.1 220,007 + +0.3 220,007 + -0.3 220,022 + +0.7 220,022 + +0.5 220,036 + +0.7 220,112 - +0.3 220,138 + +0.4 220,139 - +0.8 220,298 - +0.7 220,349 + -0.2 220,349 + +1.6 220,474 + -0.7 220,475 - +0.3 220,602 + -1.0 220,603 - -2.0 220,603 - +1.8 220,642 - -0.7 220,654 - -1.3 220,654 - -0.9 220,695 + +0.2 220,696 - +0.1 220,696 - -1.2 221,090 - -0.1 221,327 - PP_0169 0.11 -1.2 221,327 - PP_0169 0.11 -0.6 221,372 + PP_0169 0.16 -0.2 221,423 + PP_0169 0.22 +0.4 221,423 + PP_0169 0.22 +0.3 221,423 + PP_0169 0.22 -0.3 221,424 - PP_0169 0.22 +0.6 221,470 + PP_0169 0.27 -0.5 221,470 + PP_0169 0.27 -1.4 221,471 - PP_0169 0.27 -0.5 221,471 - PP_0169 0.27 -1.0 221,602 - PP_0169 0.41 -0.4 221,602 - PP_0169 0.41 +0.4 221,687 + PP_0169 0.51 +0.4 221,687 + PP_0169 0.51 -0.1 221,688 + PP_0169 0.51 -0.4 221,688 - PP_0169 0.51 +0.1 221,688 - PP_0169 0.51 +0.4 221,688 - PP_0169 0.51 -0.4 221,704 + PP_0169 0.53 -2.0 221,754 + PP_0169 0.58 -0.5 221,755 - PP_0169 0.58 +0.3 221,755 - PP_0169 0.58 -2.8 221,757 - PP_0169 0.59 +0.7 221,964 + PP_0169 0.82 +0.2 221,964 + PP_0169 0.82 +1.0 221,965 - PP_0169 0.82 +0.4 221,965 - PP_0169 0.82 +0.8 221,965 - PP_0169 0.82 -0.3 221,994 + PP_0169 0.85 +0.6 221,995 - PP_0169 0.85 -0.5 222,016 - PP_0169 0.87 -0.2 222,016 - PP_0169 0.87 -0.4
Or see this region's nucleotide sequence