Strain Fitness in Pseudomonas putida KT2440 around PP_5252

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
5,994,080	+		PP_5251	0.50	-0.3
5,994,152	-		PP_5251	0.55	-0.2
5,994,168	+		PP_5251	0.56	-0.3
5,994,168	+		PP_5251	0.56	+0.3
5,994,169	-		PP_5251	0.56	-0.2
5,994,169	-		PP_5251	0.56	+0.3
5,994,169	-		PP_5251	0.56	-0.2
5,994,169	-		PP_5251	0.56	+0.7
5,994,169	-		PP_5251	0.56	-2.0
5,994,209	-		PP_5251	0.58	+0.5
5,994,211	-		PP_5251	0.59	+0.2
5,994,211	-		PP_5251	0.59	-0.5
5,994,329	-		PP_5251	0.66	-0.4
5,994,330	+		PP_5251	0.66	+1.0
5,994,330	+		PP_5251	0.66	-0.4
5,994,330	+		PP_5251	0.66	-0.7
5,994,330	+		PP_5251	0.66	-1.1
5,994,330	+		PP_5251	0.66	+1.0
5,994,330	+		PP_5251	0.66	-0.9
5,994,331	-		PP_5251	0.66	+0.2
5,994,331	-		PP_5251	0.66	+0.7
5,994,331	-		PP_5251	0.66	-0.9
5,994,331	-		PP_5251	0.66	+0.1
5,994,331	-		PP_5251	0.66	+0.5
5,994,446	+		PP_5251	0.73	+0.2
5,994,579	+		PP_5251	0.82	-0.5
5,994,580	-		PP_5251	0.82	+0.2
5,994,838	+				+0.3
5,994,838	+				-1.2
5,994,838	+				-0.5
5,994,838	+				-0.7
5,994,838	+				+0.4
5,994,839	-				+0.5
5,994,857	+				-0.1
5,994,857	+				+1.1
5,994,857	+				-0.8
5,994,857	+				-0.8
5,994,858	-				+0.6
5,994,858	-				-0.2
5,995,018	+				-0.5
5,995,019	-				-0.1
5,995,050	+				+1.1
5,995,050	+				-0.3
5,995,051	-				+0.6
5,995,051	-				-0.5
5,995,296	+		PP_5252	0.12	+4.4
5,995,296	+		PP_5252	0.12	+0.8
5,995,297	-		PP_5252	0.13	+1.4
5,995,297	-		PP_5252	0.13	+0.4
5,995,545	+		PP_5252	0.25	+0.4
5,995,546	-		PP_5252	0.25	+0.7
5,995,566	+		PP_5252	0.26	-0.0
5,995,566	+		PP_5252	0.26	-1.0
5,995,566	+		PP_5252	0.26	+0.6
5,995,567	-		PP_5252	0.26	-0.0
5,995,567	-		PP_5252	0.26	-0.0
5,995,680	+		PP_5252	0.32	+1.4
5,995,681	-		PP_5252	0.32	-0.3
5,995,681	-		PP_5252	0.32	+0.4
5,995,681	-		PP_5252	0.32	+1.4
5,995,718	-		PP_5252	0.34	+1.5
5,995,718	-		PP_5252	0.34	+0.6
5,995,860	+		PP_5252	0.41	+1.2
5,995,860	+		PP_5252	0.41	+1.6
5,995,860	+		PP_5252	0.41	+0.8
5,995,861	-		PP_5252	0.41	-1.3
5,995,861	-		PP_5252	0.41	+1.6
5,995,861	-		PP_5252	0.41	+0.3
5,996,113	-		PP_5252	0.54	-0.4
5,996,113	-		PP_5252	0.54	-0.2
5,996,167	-		PP_5252	0.56	-0.4
5,996,268	+		PP_5252	0.61	+1.0
5,996,269	-		PP_5252	0.62	+0.1
5,996,284	+		PP_5252	0.62	-0.6
5,996,284	+		PP_5252	0.62	+0.7
5,996,285	-		PP_5252	0.62	+0.7
5,996,308	-		PP_5252	0.63	+0.3
5,996,538	+		PP_5252	0.75	+0.6
5,996,538	+		PP_5252	0.75	+1.2
5,996,539	-		PP_5252	0.75	-1.3
5,996,579	-		PP_5252	0.77	-0.2
5,996,661	+		PP_5252	0.81	+0.4
5,996,661	+		PP_5252	0.81	-0.5
5,996,662	-		PP_5252	0.81	-0.3
5,997,187	-				+0.1
5,997,198	-				-0.4
5,997,233	-				-0.8
5,997,310	+				+0.4
5,997,310	+				+0.2
5,997,311	-				-0.6
5,997,311	-				+0.4
5,997,311	-				+0.5
5,997,311	-				+0.3
5,997,311	-				+0.6
5,997,738	-		PP_5253	0.62	-1.0
5,997,739	+		PP_5253	0.62	+3.0
5,997,740	-		PP_5253	0.62	+0.4
5,997,842	-		PP_5253	0.75	-0.6
5,997,842	-		PP_5253	0.75	+0.7
5,998,012	+				-0.4
5,998,012	+				+0.9
5,998,012	+				+0.6