Experiment: L-Phenylalanine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5011 and PP_5012 overlap by 1 nucleotides PP_5012 and PP_5013 overlap by 4 nucleotides PP_5013 and PP_5014 are separated by 72 nucleotides PP_5014 and PP_5015 are separated by 1 nucleotides PP_5015 and PP_5016 are separated by 81 nucleotides
PP_5011: PP_5011 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE, at 5,711,162 to 5,711,932
_5011
PP_5012: PP_5012 - conserved protein of unknown function, at 5,711,932 to 5,712,555
_5012
PP_5013: PP_5013 - 2-octaprenylphenol hydroxylase, at 5,712,552 to 5,714,174
_5013
PP_5014: PP_5014 - Phosphoribosyl-AMP cyclohydrolase, at 5,714,247 to 5,714,639
_5014
PP_5015: PP_5015 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) <small>(from data)</small>, at 5,714,641 to 5,714,976
_5015
PP_5016: PP_5016 - twin arginine protein export complex subunit, at 5,715,058 to 5,715,330
_5016
Position (kb) 5712
5713
5714
5715 Strain fitness (log2 ratio) -1
0
1
2 at 5714.172 kb on + strand at 5714.200 kb on + strand at 5714.200 kb on + strand at 5714.395 kb on - strand, within PP_5014 at 5714.494 kb on + strand, within PP_5014 at 5714.523 kb on - strand, within PP_5014 at 5714.556 kb on + strand, within PP_5014 at 5714.557 kb on - strand, within PP_5014 at 5714.565 kb on + strand, within PP_5014 at 5714.566 kb on - strand, within PP_5014 at 5714.566 kb on - strand, within PP_5014 at 5714.622 kb on + strand at 5714.623 kb on - strand at 5714.623 kb on - strand at 5714.710 kb on + strand, within PP_5015 at 5714.710 kb on + strand, within PP_5015 at 5714.710 kb on + strand, within PP_5015 at 5714.710 kb on + strand, within PP_5015 at 5714.711 kb on - strand, within PP_5015 at 5714.711 kb on - strand, within PP_5015 at 5714.725 kb on + strand at 5714.818 kb on + strand, within PP_5015 at 5714.834 kb on - strand, within PP_5015 at 5715.026 kb on + strand at 5715.033 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine 5 mM (C) remove 5,714,172 + +1.0 5,714,200 + +0.4 5,714,200 + +0.6 5,714,395 - PP_5014 0.38 +1.4 5,714,494 + PP_5014 0.63 +0.1 5,714,523 - PP_5014 0.70 +2.4 5,714,556 + PP_5014 0.79 +1.4 5,714,557 - PP_5014 0.79 +2.4 5,714,565 + PP_5014 0.81 +2.4 5,714,566 - PP_5014 0.81 +2.4 5,714,566 - PP_5014 0.81 +2.4 5,714,622 + -0.5 5,714,623 - +2.4 5,714,623 - +0.8 5,714,710 + PP_5015 0.21 +0.8 5,714,710 + PP_5015 0.21 +2.4 5,714,710 + PP_5015 0.21 +1.4 5,714,710 + PP_5015 0.21 +0.4 5,714,711 - PP_5015 0.21 +2.4 5,714,711 - PP_5015 0.21 +2.4 5,714,725 + -0.2 5,714,818 + PP_5015 0.53 -0.4 5,714,834 - PP_5015 0.57 +0.4 5,715,026 + +0.1 5,715,033 + +0.5
Or see this region's nucleotide sequence