Experiment: L-Phenylalanine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4635 and PP_4636 are separated by 302 nucleotides PP_4636 and PP_4637 are separated by 138 nucleotides
PP_4635: PP_4635 - trans-2-enoyl-CoA reductase (NAD(+)), at 5,257,945 to 5,259,156
_4635
PP_4636: PP_4636 - acetyl-CoA acetyltransferase, at 5,259,459 to 5,260,637
_4636
PP_4637: PP_4637 - 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase family protein, at 5,260,776 to 5,261,600
_4637
Position (kb) 5259
5260
5261 Strain fitness (log2 ratio) -1
0
1
2 at 5259.178 kb on - strand at 5259.230 kb on - strand at 5259.253 kb on + strand at 5259.253 kb on + strand at 5259.253 kb on + strand at 5259.254 kb on - strand at 5259.254 kb on - strand at 5259.254 kb on - strand at 5259.339 kb on - strand at 5259.404 kb on - strand at 5259.432 kb on + strand at 5259.826 kb on - strand, within PP_4636 at 5259.826 kb on - strand, within PP_4636 at 5259.921 kb on + strand, within PP_4636 at 5259.921 kb on + strand, within PP_4636 at 5259.921 kb on + strand, within PP_4636 at 5259.922 kb on - strand, within PP_4636 at 5259.922 kb on - strand, within PP_4636 at 5259.961 kb on - strand, within PP_4636 at 5259.962 kb on - strand, within PP_4636 at 5260.682 kb on - strand at 5260.731 kb on - strand at 5260.992 kb on + strand, within PP_4637 at 5260.993 kb on - strand, within PP_4637 at 5260.993 kb on - strand, within PP_4637 at 5260.993 kb on - strand, within PP_4637 at 5261.030 kb on - strand, within PP_4637 at 5261.119 kb on + strand, within PP_4637 at 5261.165 kb on - strand, within PP_4637 at 5261.176 kb on + strand, within PP_4637 at 5261.176 kb on + strand, within PP_4637 at 5261.278 kb on + strand, within PP_4637 at 5261.278 kb on + strand, within PP_4637 at 5261.278 kb on + strand, within PP_4637 at 5261.279 kb on - strand, within PP_4637 at 5261.279 kb on - strand, within PP_4637 at 5261.279 kb on - strand, within PP_4637 at 5261.279 kb on - strand, within PP_4637 at 5261.279 kb on - strand, within PP_4637 at 5261.350 kb on + strand, within PP_4637 at 5261.350 kb on + strand, within PP_4637 at 5261.351 kb on - strand, within PP_4637 at 5261.351 kb on - strand, within PP_4637 at 5261.351 kb on - strand, within PP_4637 at 5261.462 kb on + strand, within PP_4637 at 5261.462 kb on + strand, within PP_4637 at 5261.463 kb on - strand, within PP_4637 at 5261.585 kb on + strand at 5261.585 kb on + strand at 5261.586 kb on - strand at 5261.586 kb on - strand at 5261.586 kb on - strand at 5261.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine 5 mM (C) remove 5,259,178 - -0.4 5,259,230 - +0.9 5,259,253 + +0.1 5,259,253 + +0.8 5,259,253 + +2.4 5,259,254 - +0.2 5,259,254 - +0.4 5,259,254 - -0.1 5,259,339 - -0.2 5,259,404 - -0.5 5,259,432 + +2.4 5,259,826 - PP_4636 0.31 -0.2 5,259,826 - PP_4636 0.31 -0.2 5,259,921 + PP_4636 0.39 +0.5 5,259,921 + PP_4636 0.39 -0.2 5,259,921 + PP_4636 0.39 -0.4 5,259,922 - PP_4636 0.39 -0.6 5,259,922 - PP_4636 0.39 +0.9 5,259,961 - PP_4636 0.43 +1.0 5,259,962 - PP_4636 0.43 -0.4 5,260,682 - -0.9 5,260,731 - -0.1 5,260,992 + PP_4637 0.26 +1.4 5,260,993 - PP_4637 0.26 -0.6 5,260,993 - PP_4637 0.26 -0.1 5,260,993 - PP_4637 0.26 -0.5 5,261,030 - PP_4637 0.31 +0.1 5,261,119 + PP_4637 0.42 -0.2 5,261,165 - PP_4637 0.47 +1.2 5,261,176 + PP_4637 0.48 -0.2 5,261,176 + PP_4637 0.48 -0.2 5,261,278 + PP_4637 0.61 -0.6 5,261,278 + PP_4637 0.61 +0.6 5,261,278 + PP_4637 0.61 +0.9 5,261,279 - PP_4637 0.61 -1.6 5,261,279 - PP_4637 0.61 +0.5 5,261,279 - PP_4637 0.61 +1.7 5,261,279 - PP_4637 0.61 +0.3 5,261,279 - PP_4637 0.61 +0.7 5,261,350 + PP_4637 0.70 -0.5 5,261,350 + PP_4637 0.70 +1.9 5,261,351 - PP_4637 0.70 -0.4 5,261,351 - PP_4637 0.70 -0.4 5,261,351 - PP_4637 0.70 +0.2 5,261,462 + PP_4637 0.83 -0.5 5,261,462 + PP_4637 0.83 +0.4 5,261,463 - PP_4637 0.83 -0.3 5,261,585 + -0.9 5,261,585 + +0.1 5,261,586 - +0.5 5,261,586 - +1.1 5,261,586 - -1.3 5,261,586 - -1.6
Or see this region's nucleotide sequence