Strain Fitness in Pseudomonas putida KT2440 around PP_4277

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
4,865,141	+		PP_4276	0.79	+0.2
4,865,141	+		PP_4276	0.79	+0.1
4,865,141	+		PP_4276	0.79	-0.3
4,865,142	-		PP_4276	0.79	-0.2
4,865,211	+		PP_4276	0.81	+0.6
4,865,212	-		PP_4276	0.81	-0.6
4,865,212	-		PP_4276	0.81	+0.0
4,865,212	-		PP_4276	0.81	+1.1
4,865,220	+		PP_4276	0.81	+0.7
4,865,356	-		PP_4276	0.85	-0.4
4,865,452	-		PP_4276	0.88	+0.7
4,865,486	-		PP_4276	0.89	+0.1
4,865,526	+				+0.5
4,865,527	-				+0.5
4,865,527	-				+0.6
4,865,527	-				-0.3
4,865,530	-				-0.2
4,865,530	-				-0.6
4,865,530	-				+0.1
4,865,580	+				-0.8
4,865,589	+				-0.3
4,865,589	+				-1.4
4,865,590	-				+0.2
4,865,755	+				+0.6
4,865,755	+				+0.0
4,865,755	+				+0.5
4,865,926	-				-0.4
4,865,926	-				-1.2
4,866,004	-		PP_4277	0.19	+0.4
4,866,042	+		PP_4277	0.25	-0.7
4,866,042	+		PP_4277	0.25	-0.8
4,866,042	+		PP_4277	0.25	+0.1
4,866,042	+		PP_4277	0.25	+2.8
4,866,042	+		PP_4277	0.25	+0.9
4,866,042	+		PP_4277	0.25	+0.2
4,866,042	+		PP_4277	0.25	+0.1
4,866,042	+		PP_4277	0.25	+0.7
4,866,043	-		PP_4277	0.25	+1.0
4,866,043	-		PP_4277	0.25	-1.7
4,866,043	-		PP_4277	0.25	+0.3
4,866,043	-		PP_4277	0.25	-0.9
4,866,045	+		PP_4277	0.26	+0.5
4,866,045	+		PP_4277	0.26	-0.7
4,866,045	+		PP_4277	0.26	+0.0
4,866,046	-		PP_4277	0.26	+0.4
4,866,046	-		PP_4277	0.26	-0.3
4,866,114	+		PP_4277	0.36	-0.4
4,866,115	-		PP_4277	0.36	-0.7
4,866,267	+		PP_4277	0.59	-0.1
4,866,267	+		PP_4277	0.59	-0.6
4,866,267	+		PP_4277	0.59	+0.8
4,866,267	+		PP_4277	0.59	-1.0
4,866,267	+				+0.6
4,866,267	+		PP_4277	0.59	+0.0
4,866,268	-		PP_4277	0.59	+0.0
4,866,268	-		PP_4277	0.59	+0.4
4,866,442	+		PP_4277	0.86	-0.2
4,866,489	+				+0.3
4,866,580	+				-0.5
4,866,580	+				-0.3
4,866,580	+				+0.7
4,866,580	+				-0.4
4,866,585	+				-0.0
4,866,585	+				-0.1
4,866,586	-				+0.8
4,866,586	-				-0.5
4,866,586	-				+0.4
4,866,622	+				+0.6
4,866,623	-				-0.3
4,866,660	+				-0.5
4,866,661	-				+0.6
4,866,661	-				+0.1
4,866,661	-				+1.6
4,866,661	-				-0.7
4,866,661	-				+0.5
4,866,661	-				-1.3
4,866,668	+				-0.9
4,866,668	+				+0.8
4,866,668	+				-2.4
4,866,668	+				+0.9
4,866,668	+				+0.3
4,866,669	-				+0.2
4,866,669	-				+0.7
4,866,669	-				+0.1
4,866,671	+				-0.0
4,866,672	-				+0.6
4,866,672	-				+1.5
4,866,672	-				+0.6
4,866,745	+				+0.8
4,866,746	-				-0.9
4,866,746	-				+0.4
4,866,746	-				-0.2
4,866,746	-				+0.5
4,866,760	+				-1.1
4,866,760	+				+0.3
4,866,761	-				+0.3
4,866,761	-				-0.3
4,866,780	+				-1.5
4,866,780	+				+0.3
4,866,780	+				+0.9
4,866,780	+				-0.5
4,866,836	+				+0.1
4,866,857	+				-0.9
4,866,857	+				+0.6
4,866,857	+				-0.0
4,866,857	+				-0.1
4,866,858	-				+1.3
4,866,858	-				+0.8
4,866,858	-				-2.0
4,866,858	-				+0.1
4,866,877	-				-0.6
4,866,877	-				+0.2
4,867,530	+		PP_4278	0.50	-0.1
4,867,530	+		PP_4278	0.50	-0.6
4,867,530	+		PP_4278	0.50	+0.5
4,867,531	-		PP_4278	0.50	-0.8
4,867,531	-		PP_4278	0.50	-0.4
4,867,531	-		PP_4278	0.50	+0.9
4,867,531	-		PP_4278	0.50	+3.2
4,867,531	-		PP_4278	0.50	+1.4
4,867,531	-		PP_4278	0.50	-0.3
4,867,531	-		PP_4278	0.50	+0.4