Strain Fitness in Pseudomonas putida KT2440 around PP_4192

Experiment: L-Phenylalanine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4191 and PP_4192 are separated by 3 nucleotidesPP_4192 and PP_4193 overlap by 7 nucleotidesPP_4193 and PP_4194 are separated by 352 nucleotides PP_4191: PP_4191 - succinate dehydrogenase flavoprotein subunit, at 4,736,597 to 4,738,369 _4191 PP_4192: PP_4192 - succinate dehydrogenase hydrophobic membrane anchor subunit, at 4,738,373 to 4,738,741 _4192 PP_4193: PP_4193 - succinate dehydrogenase membrane b-556 subunit, at 4,738,735 to 4,739,121 _4193 PP_4194: PP_4194 - citrate synthase, at 4,739,474 to 4,740,763 _4194 Position (kb) 4738 4739Strain fitness (log2 ratio) -1 0 1 2at 4739.167 kb on - strandat 4739.250 kb on - strandat 4739.258 kb on - strandat 4739.294 kb on - strandat 4739.323 kb on + strandat 4739.410 kb on + strandat 4739.410 kb on + strandat 4739.460 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine 5 mM (C)
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4,739,167 - +1.4
4,739,250 - +2.4
4,739,258 - -0.6
4,739,294 - +0.8
4,739,323 + +1.4
4,739,410 + +2.4
4,739,410 + +0.4
4,739,460 + +2.4

Or see this region's nucleotide sequence