Strain Fitness in Pseudomonas putida KT2440 around PP_4157

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
4,696,750	+		PP_4156	0.42	+0.4
4,696,751	-		PP_4156	0.42	+0.6
4,697,041	-		PP_4156	0.74	+0.4
4,697,086	-		PP_4156	0.79	+0.1
4,697,385	+				-0.4
4,697,456	+		PP_4157	0.17	-0.7
4,697,456	+		PP_4157	0.17	+0.4
4,697,457	-		PP_4157	0.17	-0.6
4,697,490	+		PP_4157	0.21	+0.3
4,697,490	+		PP_4157	0.21	+0.4
4,697,515	-		PP_4157	0.25	-0.0
4,697,558	+		PP_4157	0.31	-1.2
4,697,558	+		PP_4157	0.31	-0.8
4,697,559	-		PP_4157	0.31	+0.3
4,697,735	+		PP_4157	0.57	-0.2
4,697,735	+		PP_4157	0.57	+0.5
4,697,736	-		PP_4157	0.57	+0.9
4,697,736	-		PP_4157	0.57	+1.1
4,697,736	-		PP_4157	0.57	-0.8
4,697,839	+		PP_4157	0.72	+0.0
4,697,839	+		PP_4157	0.72	+0.4
4,697,839	+		PP_4157	0.72	+0.9
4,697,840	-		PP_4157	0.72	-0.1
4,697,951	+		PP_4157	0.88	+0.1
4,697,952	-		PP_4157	0.88	+0.9
4,697,952	-		PP_4157	0.88	+0.7
4,697,973	+				+0.2
4,697,974	-				-0.4
4,698,081	+				-1.4
4,698,081	+				-1.0
4,698,082	-				-0.8
4,698,082	-				-0.8
4,698,082	-				-0.5
4,698,082	-				-0.6
4,698,082	-				+0.3
4,698,082	-				-0.2
4,698,164	+				-0.8
4,698,165	-				-0.8
4,698,165	-				+0.6
4,698,218	-				-0.4
4,698,218	-				-0.4
4,698,218	-				-1.1
4,698,224	+				-1.6
4,698,225	-				-1.2
4,698,225	-				-0.6
4,698,225	-				+0.5
4,698,225	-				+0.1
4,698,572	-		PP_4158	0.20	+0.3
4,698,941	+		PP_4158	0.34	+0.1
4,698,951	-		PP_4158	0.35	+1.7