Strain Fitness in Pseudomonas putida KT2440 around PP_3997

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
4,505,518	+		PP_3997	0.29	-0.4
4,505,519	-		PP_3997	0.29	-0.1
4,505,628	+		PP_3997	0.40	+0.0
4,505,628	+		PP_3997	0.40	+0.0
4,505,628	+		PP_3997	0.40	-1.9
4,505,629	-		PP_3997	0.40	-0.3
4,505,629	-		PP_3997	0.40	+2.1
4,505,629	-		PP_3997	0.40	+0.8
4,505,632	+		PP_3997	0.40	+0.2
4,505,632	+		PP_3997	0.40	-1.1
4,505,632	+		PP_3997	0.40	-0.1
4,505,632	+		PP_3997	0.40	-0.4
4,505,632	+		PP_3997	0.40	+0.4
4,505,632	+		PP_3997	0.40	-0.4
4,505,632	+		PP_3997	0.40	-0.1
4,505,632	+		PP_3997	0.40	-0.9
4,505,633	-		PP_3997	0.41	-1.6
4,505,633	-		PP_3997	0.41	+0.1
4,505,633	-		PP_3997	0.41	-0.2
4,505,633	-		PP_3997	0.41	+0.7
4,505,633	-		PP_3997	0.41	+0.3
4,505,633	-				+0.8
4,505,634	+		PP_3997	0.41	+0.1
4,505,634	+		PP_3997	0.41	-1.5
4,505,634	-		PP_3997	0.41	+0.0
4,505,635	-		PP_3997	0.41	-0.2
4,505,635	-		PP_3997	0.41	-0.6
4,505,635	-		PP_3997	0.41	-1.5
4,505,635	-		PP_3997	0.41	-0.4
4,505,778	+		PP_3997	0.55	-1.3
4,505,778	+		PP_3997	0.55	-1.0
4,505,779	-		PP_3997	0.55	-0.6
4,505,980	+		PP_3997	0.75	+0.9
4,506,233	+				+0.7
4,506,237	-				-1.4
4,506,237	-				+0.1
4,506,279	-				-0.3
4,506,362	+				+0.8
4,506,363	-				-2.1
4,506,452	+		PP_3998	0.15	-0.6
4,506,452	+		PP_3998	0.15	-0.4
4,506,452	+		PP_3998	0.15	-0.9
4,506,452	+		PP_3998	0.15	-0.4
4,506,452	+		PP_3998	0.15	+0.7
4,506,452	+		PP_3998	0.15	+0.1
4,506,452	+		PP_3998	0.15	+0.2
4,506,452	+		PP_3998	0.15	+0.5
4,506,452	+		PP_3998	0.15	-0.1
4,506,453	-		PP_3998	0.15	+1.0
4,506,453	-		PP_3998	0.15	-0.1
4,506,453	-		PP_3998	0.15	+0.5
4,506,453	-		PP_3998	0.15	-0.2
4,506,453	-		PP_3998	0.15	-0.2
4,506,453	-		PP_3998	0.15	+0.4
4,506,453	-		PP_3998	0.15	-1.6
4,506,453	-		PP_3998	0.15	-0.1
4,506,453	-		PP_3998	0.15	-0.2
4,506,453	-		PP_3998	0.15	-0.4
4,506,620	+		PP_3998	0.32	+0.1
4,506,620	+		PP_3998	0.32	+0.3
4,506,621	-		PP_3998	0.32	+0.4
4,506,635	+		PP_3998	0.34	-0.3
4,506,635	+		PP_3998	0.34	+0.3
4,506,636	-		PP_3998	0.34	+2.0
4,506,636	-		PP_3998	0.34	-0.3
4,506,636	-		PP_3998	0.34	+0.6
4,506,656	+		PP_3998	0.36	-1.2
4,506,657	-		PP_3998	0.36	-2.4
4,506,657	-		PP_3998	0.36	+0.8
4,506,681	+		PP_3998	0.38	-0.2
4,506,682	-		PP_3998	0.39	-0.5
4,506,682	-		PP_3998	0.39	-0.4
4,506,682	-		PP_3998	0.39	-0.1
4,506,741	+		PP_3998	0.45	-0.9
4,506,775	+				+0.4
4,506,775	+		PP_3998	0.48	+1.5
4,506,789	-		PP_3998	0.49	-0.3
4,506,836	+		PP_3998	0.54	+0.4
4,506,836	+		PP_3998	0.54	-0.3
4,506,837	-		PP_3998	0.54	+0.8
4,506,861	-		PP_3998	0.57	+0.2
4,506,877	+		PP_3998	0.58	-1.3
4,506,878	-		PP_3998	0.59	-0.8
4,506,878	-		PP_3998	0.59	+0.2
4,506,894	-		PP_3998	0.60	+0.5
4,506,932	+		PP_3998	0.64	+0.3
4,506,933	-		PP_3998	0.64	-0.5
4,506,933	-		PP_3998	0.64	-2.3
4,506,948	+		PP_3998	0.66	-1.4
4,506,949	-		PP_3998	0.66	+1.0
4,506,962	+		PP_3998	0.67	-0.6
4,506,963	-		PP_3998	0.67	+0.3
4,506,977	+		PP_3998	0.69	+0.9
4,506,996	+		PP_3998	0.71	+0.5
4,506,996	+		PP_3998	0.71	-0.2
4,506,997	-		PP_3998	0.71	-0.2
4,506,997	-		PP_3998	0.71	-2.0
4,507,010	-		PP_3998	0.72	+1.1
4,507,076	+		PP_3998	0.79	+0.3
4,507,110	-		PP_3998	0.82	+0.7
4,507,163	+		PP_3998	0.88	+0.3
4,507,166	+		PP_3998	0.88	+0.1
4,507,166	+		PP_3998	0.88	-0.6
4,507,166	+		PP_3998	0.88	-1.8
4,507,166	+		PP_3998	0.88	-0.9
4,507,166	+		PP_3998	0.88	+0.3
4,507,166	+		PP_3998	0.88	+0.1
4,507,167	-		PP_3998	0.88	+0.8
4,507,167	-		PP_3998	0.88	-3.3
4,507,167	-		PP_3998	0.88	+0.2