Strain Fitness in Pseudomonas putida KT2440 around PP_3951

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
4,456,476	+		PP_3950	0.77	-0.9
4,456,476	+		PP_3950	0.77	+0.8
4,456,477	-		PP_3950	0.77	-0.1
4,456,477	-		PP_3950	0.77	-0.2
4,456,477	-		PP_3950	0.77	+0.2
4,456,477	-		PP_3950	0.77	-0.0
4,456,548	+		PP_3950	0.80	-0.7
4,456,548	+		PP_3950	0.80	+0.4
4,456,549	-		PP_3950	0.80	-0.1
4,456,606	+		PP_3950	0.83	+0.8
4,456,607	-		PP_3950	0.83	+0.3
4,456,607	-		PP_3950	0.83	+0.1
4,456,607	-		PP_3950	0.83	+0.0
4,456,943	+				-0.4
4,456,944	-				+0.5
4,456,944	-				+0.0
4,456,944	-				+0.0
4,456,973	+				-0.6
4,456,973	+				+1.1
4,456,974	-				+0.4
4,456,974	-				+0.2
4,456,974	-				-0.4
4,456,984	+				-1.9
4,456,985	-				-0.9
4,456,985	-				+0.4
4,457,165	-				-0.2
4,457,244	-				-3.1
4,457,258	+				-0.9
4,457,259	-				-2.6
4,457,260	+				-0.9
4,457,378	+				-2.3
4,457,379	-				-1.9
4,457,616	-		PP_3951	0.36	-2.9
4,457,616	-		PP_3951	0.36	-3.7
4,457,616	-		PP_3951	0.36	-2.5
4,457,616	-		PP_3951	0.36	-0.8
4,457,792	+		PP_3951	0.62	-2.1
4,457,792	+		PP_3951	0.62	+0.4
4,457,792	+		PP_3951	0.62	-2.5
4,457,793	-		PP_3951	0.62	-3.1
4,457,793	-		PP_3951	0.62	-2.0
4,457,993	-				-2.9
4,458,139	+		PP_3952	0.11	-1.7
4,458,139	+		PP_3952	0.11	-2.1
4,458,140	-		PP_3952	0.11	-0.8
4,458,140	-		PP_3952	0.11	-1.5
4,458,140	-		PP_3952	0.11	-3.7
4,458,143	+		PP_3952	0.12	-2.2
4,458,144	-		PP_3952	0.12	-2.8
4,458,144	-		PP_3952	0.12	-3.3
4,458,144	-		PP_3952	0.12	-2.8
4,458,182	-		PP_3952	0.18	-2.1
4,458,182	-		PP_3952	0.18	-3.3
4,458,378	-		PP_3952	0.48	-1.3
4,458,455	+		PP_3952	0.60	-1.2
4,458,456	-		PP_3952	0.61	-2.1
4,458,557	-		PP_3952	0.76	-4.0
4,458,592	+		PP_3952	0.82	-2.7
4,458,593	-		PP_3952	0.82	-2.9
4,458,593	-		PP_3952	0.82	-2.5
4,458,593	-		PP_3952	0.82	-2.5
4,458,609	-		PP_3952	0.84	-1.9
4,458,721	+				-0.0
4,458,721	+				-0.1
4,458,753	+				-0.8
4,458,753	+				+0.2
4,458,753	+				+1.4
4,458,754	-				-0.0
4,458,754	-				+0.1
4,458,754	-				-1.1
4,458,801	-				+0.9
4,458,801	-				-0.5
4,458,806	+				-0.2
4,458,907	-				-0.1
4,458,944	+				-0.8
4,458,945	-				-1.8
4,459,011	+				+1.0
4,459,012	-				+2.0
4,459,012	-				+0.9
4,459,019	+				-0.1
4,459,019	+				+1.2