Strain Fitness in Pseudomonas putida KT2440 around PP_3629

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
4,124,477	+		PP_3628	0.54	+0.2
4,124,477	+		PP_3628	0.54	-0.1
4,124,477	+		PP_3628	0.54	-0.2
4,124,477	+		PP_3628	0.54	-1.1
4,124,477	+		PP_3628	0.54	-0.2
4,124,477	+		PP_3628	0.54	+0.1
4,124,478	-		PP_3628	0.55	+0.4
4,124,478	-		PP_3628	0.55	-0.1
4,124,568	-		PP_3628	0.60	-0.8
4,124,568	-		PP_3628	0.60	+0.1
4,124,774	-		PP_3628	0.71	+0.3
4,124,786	+		PP_3628	0.72	+0.4
4,124,786	+		PP_3628	0.72	+0.2
4,125,084	+		PP_3628	0.89	-0.9
4,125,085	-		PP_3628	0.89	+0.4
4,125,085	-		PP_3628	0.89	+0.3
4,125,085	-		PP_3628	0.89	-0.1
4,125,173	+				-1.2
4,125,173	+				-0.4
4,125,173	+				-0.7
4,125,173	+				-0.3
4,125,174	-				+0.7
4,125,174	-				-0.4
4,125,204	-				-0.5
4,125,204	-				-2.1
4,125,204	-				-0.7
4,125,204	-				-0.3
4,125,204	-				+0.0
4,125,300	+				-0.2
4,125,300	+				+0.2
4,125,768	-		PP_3629	0.87	+1.2
4,125,800	+				-0.0
4,125,800	+				+0.6
4,125,801	-				-0.7
4,125,868	-				-0.5
4,125,875	+				-0.4
4,125,875	+				-0.5
4,125,927	+				-1.6
4,125,927	+				-0.0
4,125,983	-				+1.1
4,126,147	+				+1.6
4,126,147	+				-0.6
4,126,147	+				-0.9
4,126,147	+				-0.5
4,126,147	+				-3.1
4,126,147	+				+0.9
4,126,148	-				-0.8
4,126,148	-				+0.3
4,126,219	+		PP_3630	0.15	-1.2
4,126,219	+		PP_3630	0.15	+1.5
4,126,219	+		PP_3630	0.15	+0.6
4,126,219	+		PP_3630	0.15	+0.4
4,126,220	-		PP_3630	0.15	-0.5
4,126,220	-		PP_3630	0.15	-1.3
4,126,240	+		PP_3630	0.17	-1.1
4,126,297	+		PP_3630	0.21	-0.6
4,126,319	-		PP_3630	0.22	-0.4
4,126,364	-		PP_3630	0.26	+0.2
4,126,364	-		PP_3630	0.26	+0.1
4,126,364	-		PP_3630	0.26	-1.4
4,126,364	-		PP_3630	0.26	-0.6
4,126,546	+		PP_3630	0.39	+0.8
4,126,546	+		PP_3630	0.39	+0.0
4,126,546	+		PP_3630	0.39	-0.4
4,126,547	-		PP_3630	0.39	-0.2
4,126,549	+		PP_3630	0.40	+0.2
4,126,549	+		PP_3630	0.40	+0.2
4,126,549	+		PP_3630	0.40	+0.0
4,126,550	-		PP_3630	0.40	-0.9
4,126,612	+		PP_3630	0.44	+0.1
4,126,613	-		PP_3630	0.44	-2.5
4,126,615	+		PP_3630	0.44	+0.2
4,126,615	+		PP_3630	0.44	-1.7
4,126,616	-		PP_3630	0.45	+0.4
4,126,644	-		PP_3630	0.47	+0.2
4,126,696	+		PP_3630	0.51	-1.0
4,126,697	-		PP_3630	0.51	+0.5
4,126,730	-		PP_3630	0.53	+1.3
4,126,730	-		PP_3630	0.53	+0.1
4,126,778	+		PP_3630	0.57	-0.0
4,126,778	+		PP_3630	0.57	+0.2
4,126,778	+		PP_3630	0.57	+0.6
4,126,778	+		PP_3630	0.57	+0.6
4,126,779	-		PP_3630	0.57	-0.7
4,126,779	-		PP_3630	0.57	-1.2
4,126,779	-		PP_3630	0.57	+0.2
4,126,779	-		PP_3630	0.57	+0.7
4,126,779	-		PP_3630	0.57	-0.3
4,126,779	-		PP_3630	0.57	-1.4
4,126,805	+		PP_3630	0.59	-0.5