Strain Fitness in Pseudomonas putida KT2440 around PP_3589

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
4,076,953	+		PP_3588	0.25	-1.1
4,076,953	+		PP_3588	0.25	+0.1
4,077,036	-		PP_3588	0.32	+0.1
4,077,038	-		PP_3588	0.32	-0.9
4,077,046	-		PP_3588	0.33	-1.0
4,077,159	+		PP_3588	0.42	-1.6
4,077,198	-		PP_3588	0.46	-1.4
4,077,260	-		PP_3588	0.51	+1.0
4,077,286	+		PP_3588	0.53	+0.8
4,077,347	+		PP_3588	0.58	-0.7
4,077,348	-		PP_3588	0.58	-0.9
4,077,388	+		PP_3588	0.62	-0.3
4,077,389	-		PP_3588	0.62	-0.3
4,077,415	+		PP_3588	0.64	+0.5
4,077,416	-		PP_3588	0.64	-1.5
4,077,427	+		PP_3588	0.65	-0.6
4,077,427	+		PP_3588	0.65	-0.2
4,077,427	+		PP_3588	0.65	-0.0
4,077,427	+		PP_3588	0.65	-0.8
4,077,428	-		PP_3588	0.65	-0.0
4,077,428	-		PP_3588	0.65	+0.4
4,077,428	-		PP_3588	0.65	+0.6
4,077,428	-		PP_3588	0.65	-0.5
4,077,488	+		PP_3588	0.70	+0.3
4,077,489	-		PP_3588	0.70	+0.1
4,077,507	+		PP_3588	0.72	-1.7
4,077,507	+		PP_3588	0.72	+1.1
4,077,508	-		PP_3588	0.72	+0.8
4,077,508	-		PP_3588	0.72	+0.1
4,077,509	+		PP_3588	0.72	+0.0
4,077,509	+				+1.0
4,077,509	+		PP_3588	0.72	+0.6
4,077,509	+		PP_3588	0.72	+0.8
4,077,510	-		PP_3588	0.72	+0.6
4,077,510	-		PP_3588	0.72	+1.1
4,077,510	-		PP_3588	0.72	-1.9
4,077,513	+		PP_3588	0.72	-0.2
4,077,514	-		PP_3588	0.72	+0.4
4,077,557	+		PP_3588	0.76	-0.9
4,077,557	+		PP_3588	0.76	+0.1
4,077,557	+		PP_3588	0.76	-0.6
4,077,558	-		PP_3588	0.76	+0.1
4,077,576	-		PP_3588	0.77	+0.1
4,077,576	-		PP_3588	0.77	-2.0
4,077,922	+				+0.6
4,077,923	-				-0.4
4,077,923	-				-0.5
4,077,923	-				-0.2
4,077,923	-				-0.5
4,077,923	-				-0.5
4,077,999	-				-1.8
4,077,999	-				-1.2
4,078,031	+				-0.2
4,078,032	-				-0.8
4,078,233	-		PP_3589	0.25	-0.3
4,078,233	-		PP_3589	0.25	-1.5
4,078,641	-		PP_3589	0.57	-0.3
4,078,842	+		PP_3589	0.72	+0.1
4,078,842	+		PP_3589	0.72	-0.4
4,078,842	+		PP_3589	0.72	-1.0
4,078,842	+		PP_3589	0.72	+1.0
4,078,871	+		PP_3589	0.75	-0.6
4,078,872	-		PP_3589	0.75	-0.0
4,078,988	+		PP_3589	0.84	-0.7
4,078,989	-		PP_3589	0.84	-1.7
4,079,247	+				-1.0
4,079,439	-				+1.4
4,079,581	+				-1.8
4,079,581	+				-1.6
4,079,581	+				-3.2
4,079,671	+				-2.9
4,079,672	-				-2.6
4,079,700	+		PP_3590	0.10	-3.3
4,079,725	+		PP_3590	0.12	-2.9
4,079,725	+		PP_3590	0.12	-2.3
4,079,726	-		PP_3590	0.12	-2.2
4,079,822	+		PP_3590	0.20	-0.4
4,079,823	-		PP_3590	0.20	-2.1
4,079,823	-		PP_3590	0.20	-1.6
4,079,823	-		PP_3590	0.20	-2.0
4,079,926	+		PP_3590	0.29	-2.3
4,080,022	+		PP_3590	0.37	-1.4
4,080,098	-		PP_3590	0.43	-1.6