Strain Fitness in Pseudomonas putida KT2440 around PP_3355

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
3,792,378	-		PP_3354	0.46	-0.6
3,792,493	+		PP_3354	0.53	-0.7
3,792,494	-		PP_3354	0.53	+0.0
3,792,523	+		PP_3354	0.55	-0.3
3,792,524	-		PP_3354	0.55	+0.2
3,792,558	+		PP_3354	0.57	+0.4
3,792,558	+		PP_3354	0.57	-0.1
3,792,559	-		PP_3354	0.57	+0.1
3,792,559	-		PP_3354	0.57	-0.8
3,792,559	-		PP_3354	0.57	+0.0
3,792,578	+		PP_3354	0.58	+0.1
3,792,585	+		PP_3354	0.58	+1.1
3,792,586	-		PP_3354	0.58	+0.0
3,792,586	-		PP_3354	0.58	-1.6
3,792,586	-		PP_3354	0.58	+0.0
3,792,685	+		PP_3354	0.64	+0.4
3,792,685	+		PP_3354	0.64	+0.2
3,792,686	-		PP_3354	0.64	-0.3
3,792,686	-		PP_3354	0.64	+1.5
3,792,837	+		PP_3354	0.73	-0.7
3,792,837	+		PP_3354	0.73	+0.6
3,792,838	-		PP_3354	0.73	-0.9
3,792,942	-		PP_3354	0.79	-0.6
3,792,942	-		PP_3354	0.79	+1.0
3,792,942	-		PP_3354	0.79	+0.3
3,793,102	+		PP_3354	0.88	+0.4
3,793,103	-		PP_3354	0.88	-0.1
3,793,195	+				+0.8
3,793,229	+				+0.2
3,793,408	+				-0.6
3,793,467	-		PP_3355	0.11	+0.3
3,793,467	-		PP_3355	0.11	-0.8
3,793,634	+		PP_3355	0.25	-0.8
3,793,635	-		PP_3355	0.25	+0.0
3,793,844	+		PP_3355	0.43	-1.7
3,793,845	-		PP_3355	0.43	-1.0
3,793,920	+		PP_3355	0.49	+0.5
3,793,920	+		PP_3355	0.49	-0.2
3,793,920	+		PP_3355	0.49	+0.6
3,793,920	+		PP_3355	0.49	-1.0
3,793,921	-		PP_3355	0.49	-0.2
3,794,102	-		PP_3355	0.65	+0.9
3,794,102	-		PP_3355	0.65	+0.1
3,794,170	+		PP_3355	0.70	+1.4
3,794,170	+		PP_3355	0.70	-0.5
3,794,171	-		PP_3355	0.70	-0.3
3,794,330	-		PP_3355	0.84	-0.3
3,794,357	-		PP_3355	0.86	+1.2
3,794,357	-		PP_3355	0.86	+0.4
3,794,357	-		PP_3355	0.86	+1.5
3,794,403	+		PP_3355	0.90	+0.8
3,794,936	+		PP_3356	0.19	-0.8
3,794,936	+		PP_3356	0.19	-0.7
3,794,936	+		PP_3356	0.19	+0.5
3,794,940	+		PP_3356	0.20	-0.8
3,794,940	+		PP_3356	0.20	+0.5
3,794,941	-		PP_3356	0.20	+0.3
3,794,941	-		PP_3356	0.20	+0.5
3,794,994	-		PP_3356	0.23	+0.2
3,795,026	-		PP_3356	0.24	+0.4
3,795,096	+		PP_3356	0.28	+0.6
3,795,096	+		PP_3356	0.28	-1.8
3,795,147	+		PP_3356	0.31	+0.6
3,795,148	-		PP_3356	0.31	-0.0
3,795,160	+		PP_3356	0.31	-0.3
3,795,160	+		PP_3356	0.31	-0.3
3,795,243	+		PP_3356	0.36	+0.0
3,795,244	-		PP_3356	0.36	-0.0
3,795,244	-		PP_3356	0.36	+0.3
3,795,498	+		PP_3356	0.49	-0.5