Strain Fitness in Pseudomonas putida KT2440 around PP_3324

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
3,758,387	+		PP_3322	0.70	+1.1
3,758,387	+		PP_3322	0.70	-0.7
3,758,388	-		PP_3322	0.70	-0.8
3,758,431	-		PP_3322	0.74	+0.6
3,758,487	-		PP_3322	0.80	-2.7
3,758,487	-		PP_3322	0.80	-0.3
3,758,558	+		PP_3322	0.87	-0.3
3,758,648	-				-0.6
3,758,662	+				-0.2
3,758,663	-				+0.1
3,758,757	-				+0.6
3,758,757	-				-1.0
3,758,819	+		PP_3323	0.14	-0.3
3,758,819	+		PP_3323	0.14	+0.6
3,758,914	+		PP_3323	0.29	-0.2
3,758,914	+				+2.4
3,759,025	+		PP_3323	0.47	-2.6
3,759,128	+		PP_3323	0.64	-1.0
3,759,129	-		PP_3323	0.64	-1.0
3,759,198	+		PP_3323	0.75	+0.7
3,759,199	-		PP_3323	0.76	-0.1
3,759,199	-		PP_3323	0.76	-0.4
3,759,390	+				-0.6
3,759,390	+				-0.3
3,759,391	-				+0.3
3,759,392	+				-1.3
3,759,392	+				+0.3
3,759,392	+				+0.6
3,759,392	+				-0.7
3,759,392	+				+0.1
3,759,392	+				-0.4
3,759,392	+				-0.9
3,759,392	+				-3.3
3,759,393	-				-0.7
3,759,393	-				+0.0
3,759,393	-				+1.0
3,759,393	-				-0.4
3,759,393	-				-0.1
3,759,393	-				+1.4
3,759,393	-				+0.6
3,759,512	+		PP_3324	0.15	+0.7
3,759,513	-		PP_3324	0.15	-0.4
3,759,997	+		PP_3324	0.65	-1.0
3,759,997	+		PP_3324	0.65	+0.2
3,759,998	-		PP_3324	0.65	-0.9
3,759,998	-		PP_3324	0.65	+0.6
3,759,998	-		PP_3324	0.65	-0.1
3,759,998	-		PP_3324	0.65	-2.0
3,759,998	-		PP_3324	0.65	+0.9
3,760,032	+		PP_3324	0.68	-0.3
3,760,193	-		PP_3324	0.85	-0.8
3,760,367	+				+0.2
3,760,537	+				+2.1
3,760,609	+				-0.0
3,760,610	-				-0.7
3,760,610	-				-0.5
3,760,610	-				+0.4
3,760,627	+				+0.7
3,760,629	+				-0.8
3,760,651	-				-2.0
3,760,835	+				-0.0
3,760,863	-		PP_3325	0.10	+1.2
3,760,863	-		PP_3325	0.10	+0.1
3,760,983	+		PP_3325	0.16	-2.0
3,760,983	+		PP_3325	0.16	+0.1
3,760,984	-				+0.4
3,760,984	-		PP_3325	0.16	-0.1
3,761,016	+		PP_3325	0.17	+0.0
3,761,016	+		PP_3325	0.17	-1.1
3,761,017	-		PP_3325	0.17	-0.4
3,761,049	+		PP_3325	0.19	-0.9
3,761,049	+		PP_3325	0.19	-2.1
3,761,049	+		PP_3325	0.19	-0.7
3,761,050	-		PP_3325	0.19	-0.2
3,761,050	-		PP_3325	0.19	+0.3
3,761,116	-		PP_3325	0.22	-0.4