Strain Fitness in Pseudomonas putida KT2440 around PP_3280

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
3,713,638	+		PP_3279	0.34	+0.0
3,713,638	+		PP_3279	0.34	-0.9
3,713,702	+		PP_3279	0.38	-0.2
3,713,702	+		PP_3279	0.38	+1.0
3,713,743	+		PP_3279	0.42	-0.6
3,713,743	+		PP_3279	0.42	+0.6
3,713,744	-		PP_3279	0.42	-0.5
3,713,790	-		PP_3279	0.45	+1.1
3,713,790	-		PP_3279	0.45	-0.4
3,713,794	-		PP_3279	0.45	-1.5
3,713,939	+		PP_3279	0.56	-0.8
3,713,939	+		PP_3279	0.56	-1.0
3,713,940	-		PP_3279	0.57	-0.0
3,713,940	-		PP_3279	0.57	+1.7
3,713,940	-		PP_3279	0.57	-1.2
3,714,053	+		PP_3279	0.65	+0.6
3,714,086	+		PP_3279	0.68	-0.7
3,714,092	+		PP_3279	0.68	-0.2
3,714,092	+		PP_3279	0.68	+0.7
3,714,171	+		PP_3279	0.74	+0.2
3,714,269	+		PP_3279	0.81	-0.4
3,714,275	+		PP_3279	0.82	-3.8
3,714,276	-		PP_3279	0.82	-1.3
3,714,359	+		PP_3279	0.88	-0.3
3,714,399	-				-1.4
3,714,503	+				+0.1
3,714,503	+				+0.3
3,714,503	+				-0.5
3,714,503	+				+0.2
3,714,503	+				+1.4
3,714,503	+				-0.6
3,714,504	-				+0.4
3,714,504	-				+0.1
3,714,504	-				-0.1
3,714,536	+				-1.7
3,714,589	+				-0.8
3,714,590	-				-0.2
3,714,591	+				+0.4
3,714,591	+				+1.4
3,714,591	+				-1.5
3,714,592	-				+0.6
3,714,592	-				+0.2
3,714,672	-				-0.3
3,715,097	+		PP_3280	0.38	-0.2
3,715,457	-		PP_3280	0.67	-0.7
3,715,599	-		PP_3280	0.79	+0.6
3,715,684	+		PP_3280	0.86	-0.6
3,715,684	+		PP_3280	0.86	-0.2
3,715,684	+		PP_3280	0.86	-0.4
3,715,685	-		PP_3280	0.86	-0.3
3,715,895	-		PP_3281	0.11	+0.6
3,715,954	+		PP_3281	0.24	-0.3
3,715,955	-		PP_3281	0.24	+0.5
3,715,955	-		PP_3281	0.24	-0.4
3,716,032	+		PP_3281	0.42	-0.7
3,716,033	-		PP_3281	0.42	-0.6
3,716,072	-		PP_3281	0.51	-0.4
3,716,072	-		PP_3281	0.51	-1.2
3,716,075	+		PP_3281	0.51	+0.0
3,716,075	+		PP_3281	0.51	-1.3
3,716,075	+		PP_3281	0.51	-0.4
3,716,076	-		PP_3281	0.52	-0.8
3,716,164	-		PP_3281	0.72	+0.1
3,716,290	+				+0.0
3,716,290	+				-0.3
3,716,291	-				+0.4
3,716,291	-				+0.2
3,716,291	-				-0.9
3,716,291	-				+2.4
3,716,436	-		PP_3282	0.10	-0.3
3,716,673	-		PP_3282	0.26	-1.2