Strain Fitness in Pseudomonas putida KT2440 around PP_3226

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
3,660,901	+		PP_3225	0.16	+0.8
3,660,901	+		PP_3225	0.16	+0.0
3,660,902	-		PP_3225	0.16	-0.5
3,660,902	-		PP_3225	0.16	-0.7
3,660,902	-		PP_3225	0.16	-0.6
3,661,052	-		PP_3225	0.32	-0.3
3,661,161	+		PP_3225	0.43	-0.1
3,661,339	-		PP_3225	0.62	-0.1
3,661,564	-		PP_3225	0.86	+0.8
3,661,775	+				+1.1
3,661,979	+		PP_3226	0.25	+0.1
3,661,980	-		PP_3226	0.25	-0.1
3,661,980	-		PP_3226	0.25	+0.2
3,662,088	+		PP_3226	0.35	-0.6
3,662,089	-		PP_3226	0.35	-0.7
3,662,089	-		PP_3226	0.35	+0.8
3,662,091	-		PP_3226	0.35	+0.0
3,662,121	-		PP_3226	0.38	+0.2
3,662,343	+		PP_3226	0.57	+0.3
3,662,373	+		PP_3226	0.60	-0.2
3,662,577	+		PP_3226	0.78	+0.4
3,662,578	-		PP_3226	0.78	-0.2
3,662,685	-		PP_3226	0.87	-0.1
3,662,856	+				+0.2
3,662,901	+				+1.0
3,663,087	-				+0.9
3,663,136	-		PP_3227	0.13	-1.6
3,663,142	+		PP_3227	0.14	+0.7
3,663,143	-		PP_3227	0.14	-0.1
3,663,143	-		PP_3227	0.14	-1.1
3,663,176	-				+2.4
3,663,176	-		PP_3227	0.18	+0.5
3,663,351	-				+0.4
3,663,368	+		PP_3227	0.39	+0.8