Strain Fitness in Pseudomonas putida KT2440 around PP_3080

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
3,463,773	+		PP_3078	0.70	-0.9
3,463,810	+		PP_3078	0.72	+1.1
3,463,810	+		PP_3078	0.72	-0.9
3,463,974	-		PP_3078	0.80	-1.5
3,463,975	+		PP_3078	0.80	-1.2
3,463,975	+		PP_3078	0.80	-0.2
3,463,975	+		PP_3078	0.80	+0.5
3,463,975	+		PP_3078	0.80	-1.0
3,463,975	+		PP_3078	0.80	+0.4
3,463,976	-		PP_3078	0.80	-0.2
3,463,976	-		PP_3078	0.80	+0.5
3,463,988	-		PP_3078	0.81	+1.0
3,463,988	-		PP_3078	0.81	+0.3
3,464,012	-		PP_3078	0.82	-0.8
3,464,055	-		PP_3078	0.84	+0.6
3,464,056	+		PP_3078	0.84	+0.8
3,464,057	-		PP_3078	0.84	-0.1
3,464,133	+		PP_3078	0.88	+0.1
3,464,133	+		PP_3078	0.88	+0.5
3,464,134	-		PP_3078	0.88	-0.4
3,464,134	-		PP_3078	0.88	+0.3
3,464,134	-		PP_3078	0.88	+1.4
3,464,134	-		PP_3078	0.88	-0.0
3,464,134	-		PP_3078	0.88	+1.0
3,464,137	+		PP_3078	0.89	+2.4
3,464,137	+		PP_3078	0.89	-0.7
3,464,138	-		PP_3078	0.89	-0.9
3,464,182	+				+1.9
3,464,226	+				+0.4
3,464,226	+				-0.0
3,464,238	+				-0.1
3,464,253	+				+1.4
3,464,253	+				+0.0
3,464,253	+				+1.1
3,464,253	+				-1.2
3,464,254	-				-1.3
3,464,254	-				-2.4
3,464,328	+				+1.7
3,464,656	+				+0.1
3,464,705	-				+0.0
3,464,812	+				-2.6
3,464,813	-				-1.8
3,465,075	+		PP_3080	0.32	-1.6
3,465,075	+		PP_3080	0.32	-0.2
3,465,470	+		PP_3080	0.69	-1.4
3,465,470	+		PP_3080	0.69	-2.6
3,465,470	+		PP_3080	0.69	-2.6
3,465,471	-		PP_3080	0.69	-1.9
3,465,471	-		PP_3080	0.69	-3.5
3,465,471	-		PP_3080	0.69	-2.7
3,465,474	-		PP_3080	0.70	-1.3
3,465,491	-		PP_3080	0.71	-1.2
3,465,556	+		PP_3080	0.77	-1.9
3,465,556	+		PP_3080	0.77	-2.0
3,465,844	+				-2.2
3,465,876	-				+0.4
3,465,899	+				-2.4
3,465,900	-				-0.2
3,465,958	+				-2.6
3,465,959	-				+1.0
3,465,971	-				-0.6
3,465,971	-				-1.8
3,465,971	-				-1.1
3,465,974	-				-0.4
3,465,976	+				+0.4
3,465,976	+				-0.9
3,465,976	+				-2.8
3,465,976	+				-3.0
3,465,977	-				-0.7
3,465,977	-				-0.9
3,465,977	-				-1.3
3,465,985	+				-1.6
3,465,986	-				-2.7
3,466,137	+				-2.7
3,466,157	+		PP_5559	0.23	-1.9
3,466,278	-				-1.3
3,466,307	+				-1.1
3,466,314	+				-1.5
3,466,314	+				-1.8
3,466,315	-				+0.7
3,466,483	-		PP_3081	0.28	-1.2
3,466,525	-		PP_3081	0.37	+0.5
3,466,623	+		PP_3081	0.57	-0.6
3,466,623	+		PP_3081	0.57	-2.1
3,466,624	-		PP_3081	0.58	-0.4