Strain Fitness in Pseudomonas putida KT2440 around PP_3003

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
3,397,389	-		PP_3001	0.89	+0.1
3,397,405	+				+0.2
3,397,502	+				-0.2
3,397,502	+				-0.8
3,397,619	+		PP_3002	0.12	+1.4
3,397,662	+		PP_3002	0.17	-0.3
3,397,663	-		PP_3002	0.17	-0.4
3,398,153	+		PP_3002	0.77	-1.0
3,398,336	+				-0.0
3,398,356	+				+0.6
3,398,356	+				+0.2
3,398,356	+				-0.3
3,398,356	+				+0.9
3,398,356	+				-0.0
3,398,357	-				-0.4
3,398,357	-				+0.2
3,398,357	-				+0.5
3,398,413	-		PP_3003	0.16	-0.3
3,398,589	+		PP_3003	0.56	+0.1
3,398,589	+		PP_3003	0.56	-1.8
3,398,590	-		PP_3003	0.56	+0.1
3,398,595	+		PP_3003	0.58	+0.5
3,398,693	-		PP_3003	0.80	-0.3
3,398,743	-				+2.4
3,398,867	+				+0.0
3,398,867	+				+0.7
3,398,868	-				+0.5
3,398,868	-				-0.2
3,398,868	-				-0.2
3,398,868	-				+0.4
3,398,921	-				+0.3
3,398,940	+				-0.1
3,398,940	+				+0.8
3,398,940	+				-1.0
3,398,940	+				-0.6
3,398,941	-				-0.2
3,398,941	-				-1.9
3,398,941	-				+0.7
3,398,941	-				-0.3
3,398,941	-				+1.0
3,398,941	-				-0.2
3,398,943	+				-0.0
3,398,944	-				-0.4
3,398,944	-				-0.4
3,398,944	-				-0.6
3,399,034	-				-0.2
3,399,034	-				-0.0
3,399,205	+		PP_3004	0.71	-1.7
3,399,283	+				+0.5
3,399,283	+				+0.1
3,399,283	+				-1.4
3,399,472	-		PP_3005	0.20	-0.6
3,399,674	-		PP_3005	0.49	-2.0
3,399,697	+		PP_3005	0.52	-2.0