Strain Fitness in Pseudomonas putida KT2440 around PP_2948

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
3,351,476	+				-0.4
3,351,476	+				-0.3
3,351,476	+				-0.6
3,351,476	+				-0.1
3,351,476	+				+0.5
3,351,477	-				-0.8
3,351,477	-				-1.2
3,351,552	+				-0.1
3,351,553	-				+0.0
3,351,553	-				+0.0
3,351,596	-				-0.9
3,351,604	-				-0.2
3,351,629	+				+1.7
3,351,630	-				-1.1
3,351,630	-				-0.7
3,351,630	-				-0.2
3,351,630	-				+0.0
3,351,704	-				+0.1
3,351,713	+				-0.4
3,351,875	+		PP_2947	0.37	-0.4
3,351,884	-		PP_2947	0.39	-0.3
3,351,997	+		PP_2947	0.69	-0.1
3,351,998	-		PP_2947	0.70	+0.4
3,351,998	-		PP_2947	0.70	-0.2
3,352,012	-		PP_2947	0.73	-0.4
3,352,075	+				-1.5
3,352,376	-				+0.1
3,352,376	-				+0.3
3,352,376	-				+0.2
3,352,445	+		PP_2948	0.14	-0.4
3,352,445	+		PP_2948	0.14	-1.8
3,352,445	+		PP_2948	0.14	-1.0
3,352,445	+		PP_2948	0.14	+0.1
3,352,446	-		PP_2948	0.14	-0.5
3,352,446	-		PP_2948	0.14	-0.7
3,352,446	-		PP_2948	0.14	+0.5
3,352,446	-		PP_2948	0.14	-0.1
3,352,480	-		PP_2948	0.16	+1.0
3,352,676	+		PP_2948	0.31	+1.0
3,352,677	-		PP_2948	0.31	-1.3
3,352,804	+		PP_2948	0.40	+1.7
3,352,804	+				+2.4
3,352,805	-		PP_2948	0.40	+0.9
3,352,805	-		PP_2948	0.40	-0.9
3,352,869	+		PP_2948	0.45	-1.2
3,352,890	+		PP_2948	0.46	+0.0
3,352,891	-		PP_2948	0.46	-0.6
3,352,903	+		PP_2948	0.47	-0.5
3,352,904	-		PP_2948	0.47	+0.7
3,352,907	+		PP_2948	0.47	+0.2
3,352,907	+		PP_2948	0.47	-0.3
3,352,908	-		PP_2948	0.47	-0.3
3,352,908	-		PP_2948	0.47	+0.7
3,352,908	-		PP_2948	0.47	+0.5
3,352,973	+		PP_2948	0.52	+0.4
3,352,973	+		PP_2948	0.52	-1.6
3,352,974	-		PP_2948	0.52	+0.3
3,352,974	-		PP_2948	0.52	-1.8
3,353,030	+		PP_2948	0.56	+0.3
3,353,031	-		PP_2948	0.56	+1.2
3,353,211	-		PP_2948	0.69	-0.9
3,353,211	-		PP_2948	0.69	-0.9
3,353,211	-		PP_2948	0.69	-0.6
3,353,294	-		PP_2948	0.75	+1.2
3,353,402	-		PP_2948	0.83	-0.3
3,353,429	+		PP_2948	0.85	-0.8
3,353,458	+		PP_2948	0.87	+0.1
3,353,459	-		PP_2948	0.87	+0.4
3,353,483	+		PP_2948	0.89	-1.0
3,353,483	+		PP_2948	0.89	-1.0
3,353,483	+		PP_2948	0.89	+0.7
3,353,484	-		PP_2948	0.89	+0.6
3,353,499	+				-1.0
3,353,499	+				-0.6
3,353,564	+				-1.3
3,353,564	+				+0.2
3,353,564	+				+1.1
3,353,565	-				+0.0
3,353,565	-				-0.2
3,353,660	+				+0.6
3,353,661	-				+0.7
3,353,667	-				+1.3
3,353,725	+				+0.4
3,353,725	+				-0.4
3,353,725	+				+0.1
3,353,726	-				+1.6
3,353,726	-				-0.4
3,353,726	-				+0.5
3,353,794	-				-1.2
3,353,794	-				-1.2
3,353,923	-		PP_2949	0.19	+0.2
3,353,967	+		PP_2949	0.24	-0.0
3,353,968	-		PP_2949	0.24	+0.2
3,354,027	+		PP_2949	0.31	-1.1
3,354,027	+		PP_2949	0.31	+0.6
3,354,028	-		PP_2949	0.31	-0.3
3,354,028	-		PP_2949	0.31	+0.5
3,354,028	-		PP_2949	0.31	+1.4
3,354,028	-		PP_2949	0.31	-0.4
3,354,073	+		PP_2949	0.37	+0.5
3,354,245	+		PP_2949	0.56	-1.2
3,354,245	+		PP_2949	0.56	+0.3
3,354,378	+		PP_2949	0.72	+0.7
3,354,407	+		PP_2949	0.75	+0.1
3,354,620	+				+0.2
3,354,621	-				-1.0