Strain Fitness in Pseudomonas putida KT2440 around PP_2787

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
3,173,769	-				+1.1
3,174,025	+		PP_2786	0.23	+0.3
3,174,026	-		PP_2786	0.23	-0.8
3,174,067	+		PP_2786	0.28	-0.3
3,174,068	-		PP_2786	0.28	+0.5
3,174,158	-		PP_2786	0.39	+0.3
3,174,229	+		PP_2786	0.48	-0.2
3,174,235	+		PP_2786	0.48	-0.2
3,174,269	-		PP_2786	0.52	-0.2
3,174,269	-		PP_2786	0.52	+0.1
3,174,316	+		PP_2786	0.58	+1.1
3,174,434	+		PP_2786	0.72	-0.9
3,174,435	-		PP_2786	0.72	-0.4
3,174,501	+		PP_2786	0.80	-0.3
3,174,501	+		PP_2786	0.80	-0.6
3,174,501	+		PP_2786	0.80	+0.1
3,174,568	+		PP_2786	0.88	-0.6
3,174,568	+		PP_2786	0.88	+0.2
3,174,647	-				+0.2
3,174,710	-				+0.4
3,174,710	-				-1.3
3,174,772	+				+0.1
3,174,782	-				+0.6
3,174,818	-				-0.2
3,174,887	-				-1.6
3,174,887	-				+0.3
3,174,887	-				+0.3
3,175,439	-		PP_2787	0.28	+0.1
3,175,468	+		PP_2787	0.29	-0.2
3,175,469	-		PP_2787	0.29	-0.1
3,175,656	+		PP_2787	0.37	-0.0
3,175,656	+		PP_2787	0.37	-0.0
3,175,790	-		PP_2787	0.42	+0.4
3,176,074	+		PP_2787	0.53	-1.2
3,176,075	-		PP_2787	0.53	+0.4
3,176,075	-		PP_2787	0.53	-0.4
3,176,201	-		PP_2787	0.58	-2.4
3,176,389	+		PP_2787	0.65	-0.4
3,176,389	+		PP_2787	0.65	-1.0
3,176,676	+		PP_2787	0.76	-1.4
3,176,677	-				+0.8
3,176,681	+		PP_2787	0.76	-0.8
3,176,743	+		PP_2787	0.78	-0.1
3,176,747	+		PP_2787	0.78	-0.8
3,176,915	-		PP_2787	0.85	-2.4
3,176,943	+		PP_2787	0.86	-0.4
3,177,139	+				-0.1
3,177,139	+				+0.6
3,177,758	+				-0.3
3,177,758	+				-0.5
3,178,026	-		PP_2789	0.17	-0.2
3,178,026	-		PP_2789	0.17	-0.2
3,178,080	+		PP_2789	0.25	+0.5
3,178,081	-		PP_2789	0.26	+0.4
3,178,081	-		PP_2789	0.26	+0.1
3,178,092	+		PP_2789	0.27	+0.3
3,178,124	+		PP_2789	0.33	+0.6
3,178,125	-		PP_2789	0.33	+0.3
3,178,125	-		PP_2789	0.33	+0.0
3,178,153	+		PP_2789	0.37	+0.4
3,178,179	+		PP_2789	0.42	+0.3
3,178,289	-		PP_2789	0.60	-0.4