Strain Fitness in Pseudomonas putida KT2440 around PP_2608

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
2,981,372	+		PP_2607	0.43	+1.0
2,981,373	-		PP_2607	0.43	-0.3
2,981,373	-		PP_2607	0.43	+0.5
2,981,606	+		PP_2607	0.56	-1.4
2,982,189	+		PP_2607	0.90	+0.0
2,982,190	-		PP_2607	0.90	-2.1
2,982,190	-		PP_2607	0.90	-1.9
2,982,459	+		PP_2608	0.11	-0.2
2,982,460	-		PP_2608	0.11	-0.1
2,982,650	+		PP_2608	0.35	+1.1
2,982,685	-		PP_2608	0.39	-0.7
2,982,723	+		PP_2608	0.44	-0.2
2,982,724	-		PP_2608	0.44	-1.0
2,982,754	+		PP_2608	0.48	+0.5
2,982,754	+		PP_2608	0.48	+1.1
2,982,897	+		PP_2608	0.65	-1.3
2,982,898	-		PP_2608	0.65	+0.4
2,982,898	-		PP_2608	0.65	-0.1
2,982,971	-		PP_2608	0.74	+1.0
2,982,971	-		PP_2608	0.74	+0.6
2,982,971	-		PP_2608	0.74	+1.4
2,982,971	-		PP_2608	0.74	+0.8
2,982,971	-		PP_2608	0.74	+0.0
2,983,190	+				-0.3
2,983,191	-				-0.1
2,983,191	-				-2.8
2,983,202	+				+0.8
2,983,203	-				-0.9
2,983,259	-				-3.1
2,983,463	+		PP_2609	0.17	-1.0
2,983,463	+		PP_2609	0.17	-2.0
2,983,463	+		PP_2609	0.17	+0.6
2,983,575	+		PP_2609	0.31	-0.4
2,983,575	+		PP_2609	0.31	-0.5
2,983,575	+		PP_2609	0.31	-0.3
2,983,575	+		PP_2609	0.31	+0.3
2,983,575	+		PP_2609	0.31	-0.1
2,983,575	+		PP_2609	0.31	+0.3
2,983,576	-		PP_2609	0.31	+0.1
2,983,576	-		PP_2609	0.31	-0.3
2,983,704	+		PP_2609	0.48	+1.4
2,983,706	+		PP_2609	0.48	-0.8
2,983,706	+		PP_2609	0.48	+0.2
2,983,707	-		PP_2609	0.48	+0.1
2,983,755	+		PP_2609	0.54	-0.3
2,983,755	+		PP_2609	0.54	+0.2
2,983,755	+		PP_2609	0.54	-0.4
2,983,756	-		PP_2609	0.55	-1.3
2,983,815	+		PP_2609	0.62	+0.9
2,983,815	+		PP_2609	0.62	+0.1
2,983,888	+		PP_2609	0.72	-0.2
2,983,889	-		PP_2609	0.72	+1.0
2,983,889	-		PP_2609	0.72	-0.5
2,983,889	-		PP_2609	0.72	-0.2
2,983,916	+		PP_2609	0.75	-0.6
2,983,916	+		PP_2609	0.75	-1.0
2,983,917	-		PP_2609	0.75	-1.1
2,983,917	-		PP_2609	0.75	-0.8
2,984,009	+		PP_2609	0.87	+0.4
2,984,009	+		PP_2609	0.87	-1.0
2,984,010	-		PP_2609	0.88	+1.2
2,984,010	-		PP_2609	0.88	-1.5
2,984,010	-		PP_2609	0.88	-0.6
2,984,030	+				-0.9
2,984,030	+				+0.5
2,984,056	+				+0.1
2,984,057	-				-1.0
2,984,057	-				-1.2
2,984,067	+				+0.5
2,984,068	-				+0.3
2,984,068	-				+0.9