Strain Fitness in Pseudomonas putida KT2440 around PP_2329

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
2,655,315	+				-0.9
2,655,436	+				+1.1
2,655,436	+				-0.6
2,655,452	+				-0.7
2,655,453	-				-0.2
2,655,639	-		PP_2328	0.25	+1.4
2,655,639	-		PP_2328	0.25	+1.4
2,655,639	-		PP_2328	0.25	+2.4
2,655,639	-		PP_2328	0.25	+0.8
2,655,640	+		PP_2328	0.25	+0.4
2,655,640	+		PP_2328	0.25	+1.4
2,655,641	-		PP_2328	0.25	+0.8
2,655,641	-		PP_2328	0.25	+1.4
2,655,641	-		PP_2328	0.25	+0.8
2,655,641	-		PP_2328	0.25	+0.1
2,655,641	-		PP_2328	0.25	+0.4
2,655,641	-		PP_2328	0.25	+0.1
2,655,641	-		PP_2328	0.25	+1.4
2,655,648	+		PP_2328	0.26	+0.8
2,655,688	+		PP_2328	0.32	+2.4
2,655,688	+		PP_2328	0.32	+0.4
2,655,688	+		PP_2328	0.32	+2.4
2,655,689	-		PP_2328	0.32	+0.8
2,656,014	+		PP_2328	0.76	-0.2
2,656,015	-		PP_2328	0.76	+1.4
2,656,021	-		PP_2328	0.77	+1.4
2,656,021	-		PP_2328	0.77	+1.4
2,656,150	+				+2.4
2,656,150	+				-0.4
2,656,151	-				-0.9
2,656,151	-				+2.4
2,656,229	+				-0.2
2,656,230	-				-0.4
2,656,232	+				-0.6
2,656,233	-				+0.5
2,656,233	-				+0.4
2,656,244	-				+0.6
2,656,262	+				+2.4
2,656,449	+		PP_2329	0.13	-0.2
2,656,449	+		PP_2329	0.13	-0.9
2,656,449	+		PP_2329	0.13	+1.2
2,656,450	-		PP_2329	0.13	-0.6
2,656,450	-		PP_2329	0.13	-0.2
2,656,450	-		PP_2329	0.13	-0.2
2,656,450	-		PP_2329	0.13	-0.6
2,656,772	-		PP_2329	0.37	-1.3
2,656,886	-		PP_2329	0.46	-0.2
2,657,031	+		PP_2329	0.57	+0.1
2,657,031	+		PP_2329	0.57	-1.2
2,657,031	+		PP_2329	0.57	+0.5
2,657,032	-		PP_2329	0.57	+0.2
2,657,040	-		PP_2329	0.57	-1.0
2,657,040	-		PP_2329	0.57	-0.5
2,657,062	-		PP_2329	0.59	+0.7
2,657,177	-		PP_2329	0.68	-0.5
2,657,235	+		PP_2329	0.72	-0.3
2,657,235	+		PP_2329	0.72	+0.5
2,657,235	+		PP_2329	0.72	-1.2
2,657,235	+		PP_2329	0.72	+0.2
2,657,235	+		PP_2329	0.72	-0.2
2,657,236	-		PP_2329	0.72	-0.1
2,657,236	-		PP_2329	0.72	-1.0
2,657,357	+		PP_2329	0.81	+0.5
2,657,358	-		PP_2329	0.81	-0.7
2,657,559	+				+1.3
2,657,581	-				-0.3
2,657,595	-				-1.0
2,657,595	-				-1.1
2,657,615	+				+0.8
2,657,615	+				-0.6
2,657,616	-				-0.4
2,657,651	-				+0.0
2,657,712	-				+0.4
2,657,817	-				-0.6
2,657,817	-				+1.7
2,658,044	+		PP_2330	0.23	-0.7
2,658,045	-		PP_2330	0.23	+0.8
2,658,046	+		PP_2330	0.23	-1.9
2,658,068	-		PP_2330	0.25	+1.0
2,658,283	-		PP_2330	0.47	-0.9
2,658,332	-		PP_2330	0.52	+1.2
2,658,410	-		PP_2330	0.60	+0.1
2,658,410	-		PP_2330	0.60	-0.6
2,658,579	-		PP_2330	0.77	+0.4