Strain Fitness in Pseudomonas putida KT2440 around PP_2324

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
2,650,470	+				+1.1
2,650,473	+				+0.2
2,650,478	-				+1.0
2,650,511	+				+0.2
2,650,511	+				-0.4
2,650,515	+				+1.3
2,650,516	-				-2.1
2,650,516	-				+0.6
2,650,516	-				-0.0
2,650,518	+				+0.1
2,650,518	+				+1.6
2,650,525	+				+0.4
2,650,525	+				+0.2
2,650,534	+				+0.1
2,650,534	+				+1.5
2,650,669	+				+0.2
2,650,681	+				+0.4
2,650,682	-				+0.6
2,650,708	-				-0.9
2,650,708	-				-0.1
2,650,710	+				-0.3
2,650,710	+				+1.4
2,650,711	-				+0.2
2,650,711	-				-1.3
2,650,809	+				+1.1
2,650,810	-				-0.5
2,650,810	-				+0.7
2,650,810	-				+0.1
2,650,812	+				+0.1
2,650,812	+				+0.8
2,650,812	+				+0.9
2,650,812	+				+0.6
2,650,812	+				+0.5
2,650,812	+				+0.5
2,650,812	+				+0.8
2,650,813	-				-0.1
2,650,813	-				-1.8
2,650,813	-				+1.2
2,650,813	-				-0.4
2,650,813	-				-0.8
2,650,813	-				-2.3
2,650,813	-				-0.6
2,650,813	-				-1.0
2,650,813	-				+0.3
2,650,813	-				+0.4
2,650,813	-				+0.8
2,650,813	-				+0.3
2,650,843	+				-0.8
2,650,843	+				-1.2
2,650,844	-				+0.4
2,650,880	+		PP_2323	0.18	+0.5
2,650,915	-		PP_2323	0.26	+1.2
2,650,919	+		PP_2323	0.27	+0.1
2,650,919	+		PP_2323	0.27	+0.9
2,650,920	-		PP_2323	0.27	-0.1
2,650,920	-		PP_2323	0.27	+0.2
2,650,949	+		PP_2323	0.34	-1.3
2,650,949	+		PP_2323	0.34	+1.4
2,650,949	+		PP_2323	0.34	+0.2
2,650,949	+		PP_2323	0.34	-0.3
2,650,950	-		PP_2323	0.34	+0.9
2,650,950	-		PP_2323	0.34	+0.4
2,651,029	+		PP_2323	0.52	+0.2
2,651,030	-		PP_2323	0.52	+0.1
2,651,030	-		PP_2323	0.52	+1.3
2,651,038	+		PP_2323	0.54	-0.4
2,651,038	+		PP_2323	0.54	+2.4
2,651,039	-		PP_2323	0.54	-0.0
2,651,071	+		PP_2323	0.62	+1.2
2,651,072	-		PP_2323	0.62	+0.8
2,651,072	-		PP_2323	0.62	+0.0
2,651,072	-		PP_2323	0.62	+0.6
2,651,143	+		PP_2323	0.78	+0.1
2,651,186	-		PP_2323	0.88	+0.5
2,651,186	-		PP_2323	0.88	-0.2
2,651,186	-		PP_2323	0.88	-0.2
2,651,197	+				-0.9
2,651,198	-				+0.8
2,651,198	-				+0.3
2,651,198	-				+0.2
2,651,198	-				+0.8
2,651,317	-				-0.4
2,651,414	+				-1.1
2,651,655	-		PP_2324	0.31	-2.7
2,651,815	-		PP_2324	0.46	-0.4
2,652,045	-		PP_2324	0.66	-0.7
2,652,098	+		PP_2324	0.71	-0.1
2,652,116	+		PP_2324	0.73	+1.4
2,652,116	+		PP_2324	0.73	+1.1
2,652,116	+		PP_2324	0.73	-0.9
2,652,116	+		PP_2324	0.73	+0.3
2,652,117	-		PP_2324	0.73	+0.1
2,652,117	-		PP_2324	0.73	-1.6
2,652,123	+		PP_2324	0.73	+1.1
2,652,165	-		PP_2324	0.77	-0.8
2,652,370	+				-2.1
2,652,388	-				+1.0
2,652,388	-				-0.1
2,652,419	+				+1.0
2,652,420	-				+0.7
2,652,470	+				-0.3
2,652,471	-				-0.4
2,652,479	-				+0.2
2,652,570	+				+0.8
2,652,570	+				-0.1
2,652,599	+				-0.7
2,652,671	+				-0.2
2,652,729	-		PP_2325	0.12	+0.7
2,652,729	-		PP_2325	0.12	-1.5
2,652,803	+		PP_2325	0.20	+0.4
2,652,804	-		PP_2325	0.20	+1.3
2,652,804	-		PP_2325	0.20	+0.2
2,653,035	+		PP_2325	0.44	-2.7
2,653,035	+		PP_2325	0.44	+0.7
2,653,036	-		PP_2325	0.45	-0.4
2,653,214	+		PP_2325	0.63	-0.6
2,653,214	+		PP_2325	0.63	-0.3
2,653,273	+		PP_2325	0.70	+1.7
2,653,287	+		PP_2325	0.71	-0.8
2,653,288	-		PP_2325	0.71	-0.2
2,653,338	+		PP_2325	0.76	+0.7
2,653,339	-		PP_2325	0.76	-0.2
2,653,339	-		PP_2325	0.76	-0.3
2,653,409	+		PP_2325	0.84	-1.1
2,653,409	+		PP_2325	0.84	-1.3
2,653,409	+		PP_2325	0.84	-0.9
2,653,410	-		PP_2325	0.84	+0.8