Strain Fitness in Pseudomonas putida KT2440 around PP_2233

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
2,540,025	+		PP_2231	0.88	+0.3
2,540,116	-				-0.9
2,540,116	-				+0.8
2,540,116	-				+0.4
2,540,192	-				-1.2
2,540,193	+				+0.8
2,540,194	-				-0.3
2,540,220	+				-1.1
2,540,221	-				-0.6
2,540,222	+				-1.6
2,540,223	-				-0.0
2,540,223	-				-1.4
2,540,593	+		PP_2232	0.63	-0.4
2,540,593	+		PP_2232	0.63	-1.6
2,540,594	-		PP_2232	0.64	+0.2
2,540,636	-		PP_2232	0.72	+0.1
2,540,636	-		PP_2232	0.72	-0.5
2,540,718	+		PP_2232	0.87	-0.9
2,540,719	-		PP_2232	0.87	-1.2
2,540,729	-		PP_2232	0.89	-0.4
2,540,735	-				+1.4
2,540,739	+				-0.7
2,540,877	-				-1.8
2,541,341	+				+0.2
2,541,403	-				+0.2
2,541,403	-				+0.6
2,541,403	-				+0.0
2,541,419	+				+0.7
2,541,420	-				+0.3
2,541,420	-				+0.7
2,541,420	-				+0.5
2,541,420	-				-0.5
2,541,420	-				+0.1
2,541,423	+				-0.4
2,541,423	+				-0.6
2,541,424	-				-0.0
2,541,424	-				+0.4
2,541,424	-				+0.3
2,541,425	+				-1.2
2,541,425	+				+1.9
2,541,425	+				-1.4
2,541,426	-				+0.7
2,541,426	-				-0.4
2,541,426	-				-0.1
2,541,426	-				-0.9
2,541,426	-				-0.5
2,541,426	-				-0.9
2,541,466	+				-0.6
2,541,466	+				-0.1
2,541,467	-				-0.7
2,541,467	-				-0.2
2,541,518	+				+0.7
2,541,519	-				+0.1
2,541,691	-		PP_2234	0.23	-0.6
2,541,796	+		PP_2234	0.33	+0.1
2,541,796	+		PP_2234	0.33	+0.1
2,541,796	+		PP_2234	0.33	+0.4
2,541,797	-		PP_2234	0.33	-0.6
2,541,884	+		PP_2234	0.42	+0.9
2,541,884	+		PP_2234	0.42	+0.9
2,541,884	+		PP_2234	0.42	+0.9
2,541,884	+		PP_2234	0.42	-0.3
2,541,925	-		PP_2234	0.46	-0.6
2,542,055	+		PP_2234	0.59	-0.1
2,542,055	+		PP_2234	0.59	+0.4
2,542,271	+		PP_2234	0.81	-0.3
2,542,271	+		PP_2234	0.81	-0.1