Strain Fitness in Pseudomonas putida KT2440 around PP_2137

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
2,438,312	+		PP_2136	0.57	-0.9
2,438,522	-		PP_2136	0.67	-0.4
2,438,695	+		PP_2136	0.75	-0.5
2,438,695	+		PP_2136	0.75	-0.9
2,438,838	+		PP_2136	0.82	-1.4
2,438,848	+		PP_2136	0.82	+0.7
2,438,848	+		PP_2136	0.82	-1.4
2,438,849	-		PP_2136	0.82	-0.6
2,438,849	-		PP_2136	0.82	-0.7
2,439,058	+				-1.0
2,439,148	+				+0.8
2,439,149	-				+0.1
2,439,149	-				-2.0
2,439,242	+				-0.1
2,439,243	-				-2.1
2,439,243	-				+0.3
2,439,243	-				-0.1
2,439,260	-				-0.5
2,439,660	+		PP_2137	0.34	-0.3
2,439,660	+		PP_2137	0.34	-0.8
2,439,661	-		PP_2137	0.34	+0.1
2,439,854	+		PP_2137	0.51	+0.6
2,439,980	-		PP_2137	0.61	-0.2
2,440,408	+				+1.8
2,440,464	-				-0.2
2,440,464	-				-0.8
2,440,530	+				+0.0
2,440,532	+				+0.4
2,440,541	+		PP_2138	0.12	-0.5
2,440,541	+		PP_2138	0.12	+0.6
2,440,542	-		PP_2138	0.12	+0.1
2,440,542	-		PP_2138	0.12	+0.1
2,440,610	+		PP_2138	0.39	-0.4
2,440,611	-		PP_2138	0.40	+0.6
2,440,611	-		PP_2138	0.40	-2.2
2,440,611	-		PP_2138	0.40	+1.1
2,440,622	+		PP_2138	0.44	-1.5
2,440,631	+		PP_2138	0.48	-0.6
2,440,631	+		PP_2138	0.48	+0.1
2,440,631	+		PP_2138	0.48	-1.9
2,440,632	-		PP_2138	0.48	-1.7
2,440,632	-		PP_2138	0.48	-2.4
2,440,794	+				+1.0
2,440,794	+				+0.0
2,440,796	+				-0.2
2,440,796	+				+0.3
2,440,796	+				+0.6
2,440,796	+				-0.5
2,440,796	+				-0.1
2,440,796	+				-0.5
2,440,796	+				+1.4
2,440,796	+				-0.3
2,440,796	+				-0.7
2,440,796	+				-1.4
2,440,796	+				+1.2
2,440,798	+				+1.1
2,440,798	+				+0.1
2,440,798	+				-1.0
2,440,798	+				+0.5
2,440,798	+				-0.3
2,440,798	+				-0.5
2,440,800	+				-0.3
2,440,800	+				-0.3