Strain Fitness in Pseudomonas putida KT2440 around PP_2114

Experiment: L-Phenylalanine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2113 and PP_2114 are separated by 420 nucleotidesPP_2114 and PP_2115 are separated by 344 nucleotidesPP_2115 and PP_2116 are separated by 21 nucleotidesPP_2116 and PP_2117 are separated by 60 nucleotides PP_2113: PP_2113 - Ribosomal RNA large subunit methyltransferase M, at 2,411,672 to 2,412,736 _2113 PP_2114: PP_2114 - transposase, at 2,413,157 to 2,414,458 _2114 PP_2115: PP_2115 - conserved protein of unknown function, at 2,414,803 to 2,415,000 _2115 PP_2116: PP_2116 - sulfurtransferase, at 2,415,022 to 2,415,264 _2116 PP_2117: PP_2117 - Erythronate-4-phosphate dehydrogenase, at 2,415,325 to 2,416,467 _2117 Position (kb) 2413 2414 2415Strain fitness (log2 ratio) -1 0 1at 2412.211 kb on + strand, within PP_2113at 2412.211 kb on + strand, within PP_2113at 2412.335 kb on + strand, within PP_2113at 2412.386 kb on - strand, within PP_2113at 2412.505 kb on + strand, within PP_2113at 2412.591 kb on - strand, within PP_2113at 2412.600 kb on + strand, within PP_2113at 2412.600 kb on + strand, within PP_2113at 2412.601 kb on - strand, within PP_2113at 2412.601 kb on - strand, within PP_2113at 2412.677 kb on + strandat 2415.295 kb on + strandat 2415.332 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine 5 mM (C)
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2,412,211 + PP_2113 0.51 -0.9
2,412,211 + PP_2113 0.51 +1.1
2,412,335 + PP_2113 0.62 -0.1
2,412,386 - PP_2113 0.67 -0.3
2,412,505 + PP_2113 0.78 +0.9
2,412,591 - PP_2113 0.86 +0.1
2,412,600 + PP_2113 0.87 -0.4
2,412,600 + PP_2113 0.87 +1.7
2,412,601 - PP_2113 0.87 +0.8
2,412,601 - PP_2113 0.87 -0.1
2,412,677 + +0.6
2,415,295 + -0.2
2,415,332 + +1.0

Or see this region's nucleotide sequence