Experiment: L-Phenylalanine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_2113 and PP_2114 are separated by 420 nucleotides PP_2114 and PP_2115 are separated by 344 nucleotides PP_2115 and PP_2116 are separated by 21 nucleotides PP_2116 and PP_2117 are separated by 60 nucleotides
PP_2113: PP_2113 - Ribosomal RNA large subunit methyltransferase M, at 2,411,672 to 2,412,736
_2113
PP_2114: PP_2114 - transposase, at 2,413,157 to 2,414,458
_2114
PP_2115: PP_2115 - conserved protein of unknown function, at 2,414,803 to 2,415,000
_2115
PP_2116: PP_2116 - sulfurtransferase, at 2,415,022 to 2,415,264
_2116
PP_2117: PP_2117 - Erythronate-4-phosphate dehydrogenase, at 2,415,325 to 2,416,467
_2117
Position (kb)
2413
2414
2415 Strain fitness (log2 ratio)
-1
0
1 at 2412.211 kb on + strand, within PP_2113 at 2412.211 kb on + strand, within PP_2113 at 2412.335 kb on + strand, within PP_2113 at 2412.386 kb on - strand, within PP_2113 at 2412.505 kb on + strand, within PP_2113 at 2412.591 kb on - strand, within PP_2113 at 2412.600 kb on + strand, within PP_2113 at 2412.600 kb on + strand, within PP_2113 at 2412.601 kb on - strand, within PP_2113 at 2412.601 kb on - strand, within PP_2113 at 2412.677 kb on + strand at 2415.295 kb on + strand at 2415.332 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine 5 mM (C) remove 2,412,211 + PP_2113 0.51 -0.9 2,412,211 + PP_2113 0.51 +1.1 2,412,335 + PP_2113 0.62 -0.1 2,412,386 - PP_2113 0.67 -0.3 2,412,505 + PP_2113 0.78 +0.9 2,412,591 - PP_2113 0.86 +0.1 2,412,600 + PP_2113 0.87 -0.4 2,412,600 + PP_2113 0.87 +1.7 2,412,601 - PP_2113 0.87 +0.8 2,412,601 - PP_2113 0.87 -0.1 2,412,677 + +0.6 2,415,295 + -0.2 2,415,332 + +1.0
Or see this region's nucleotide sequence