Strain Fitness in Pseudomonas putida KT2440 around PP_2051

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
2,332,069	-		PP_2049	0.53	+0.2
2,332,069	-		PP_2049	0.53	+1.5
2,332,069	-		PP_2049	0.53	+0.5
2,332,261	+		PP_2049	0.69	-0.9
2,332,360	+				-0.4
2,332,360	+		PP_2049	0.78	-0.7
2,332,603	+				+0.3
2,332,604	-				+0.5
2,332,604	-				-0.6
2,332,604	-				-0.1
2,332,604	-				-0.4
2,332,604	-				-0.9
2,332,615	+				+0.4
2,332,615	+				+0.3
2,332,615	+				+0.7
2,332,647	+				+0.8
2,332,648	-				+0.4
2,332,695	+		PP_2050	0.17	-0.4
2,332,696	-		PP_2050	0.17	+0.0
2,332,719	+		PP_2050	0.22	-1.6
2,332,719	+				-0.6
2,332,719	+		PP_2050	0.22	-0.7
2,332,720	-		PP_2050	0.22	+0.8
2,332,723	-		PP_2050	0.23	-0.8
2,332,723	-		PP_2050	0.23	+0.9
2,332,969	+		PP_2050	0.77	-0.8
2,332,969	+		PP_2050	0.77	-0.2
2,332,969	+		PP_2050	0.77	+0.0
2,332,969	+		PP_2050	0.77	-0.8
2,332,970	-		PP_2050	0.77	+0.2
2,333,185	-				+0.1
2,333,471	+		PP_2051	0.34	-0.2
2,333,471	+		PP_2051	0.34	+0.6
2,333,471	+		PP_2051	0.34	-0.1
2,333,472	-		PP_2051	0.34	-0.0
2,333,472	-		PP_2051	0.34	+0.1
2,333,472	-		PP_2051	0.34	+1.7
2,333,485	-		PP_2051	0.35	+0.1
2,333,507	+		PP_2051	0.37	-0.3
2,333,507	+		PP_2051	0.37	+0.6
2,333,507	+		PP_2051	0.37	-0.3
2,333,507	+		PP_2051	0.37	-0.5
2,333,507	+		PP_2051	0.37	-0.8
2,333,507	+		PP_2051	0.37	+0.4
2,333,508	-		PP_2051	0.37	-0.0
2,333,508	-		PP_2051	0.37	-0.4
2,333,508	-		PP_2051	0.37	-0.0
2,333,508	-		PP_2051	0.37	+0.5
2,333,508	-		PP_2051	0.37	-0.7
2,333,557	-		PP_2051	0.41	+0.7
2,333,579	+		PP_2051	0.43	-0.0
2,333,580	-		PP_2051	0.43	-0.4
2,333,970	+		PP_2051	0.76	-0.6
2,333,971	-		PP_2051	0.76	-0.2
2,333,971	-		PP_2051	0.76	+0.6
2,333,994	+		PP_2051	0.78	-0.1
2,334,009	+		PP_2051	0.79	-0.0
2,334,047	+		PP_2051	0.83	-0.6
2,334,047	+		PP_2051	0.83	-0.8
2,334,048	-		PP_2051	0.83	+0.1
2,334,048	-		PP_2051	0.83	-0.3
2,334,179	-				-1.3
2,334,179	-				-0.7
2,334,189	-				-0.8
2,334,189	-				-2.1
2,334,189	-				+0.4
2,334,252	-				-0.2
2,334,335	-				-1.2
2,334,343	-				+0.1
2,334,343	-				+0.2
2,334,599	+		PP_2052	0.13	-0.2
2,334,599	+		PP_2052	0.13	-0.4
2,334,676	-		PP_2052	0.16	-1.1
2,334,764	-		PP_2052	0.20	-0.4
2,335,195	-		PP_2052	0.41	-0.9