Strain Fitness in Pseudomonas putida KT2440 around PP_1893

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
2,133,380	-		PP_1891	0.58	+0.1
2,133,490	+		PP_1891	0.79	-0.5
2,133,491	-		PP_1891	0.79	-0.0
2,133,590	+				+0.8
2,133,590	+				+0.0
2,133,590	+				-0.2
2,133,591	-				+0.7
2,133,610	-				-0.6
2,133,695	+				-0.6
2,133,695	+				+0.2
2,133,696	-				-0.6
2,133,722	-				+0.3
2,133,722	-				-0.5
2,133,777	+				+0.1
2,133,777	+				+0.4
2,133,777	+				+1.7
2,133,777	+				-0.5
2,133,777	+				-0.7
2,133,832	+				-0.1
2,134,066	-		PP_1892	0.59	-0.2
2,134,066	-		PP_1892	0.59	-0.9
2,134,094	+		PP_1892	0.66	-1.4
2,134,095	-		PP_1892	0.66	+1.1
2,134,213	-				-1.6
2,134,273	+				-0.9
2,134,273	+				-0.1
2,134,274	-				+0.4
2,134,274	-				+1.2
2,134,274	-				+0.8
2,134,275	+				-0.2
2,134,496	+				+1.3
2,134,496	+				+2.4
2,134,497	-				+0.5
2,134,681	-		PP_1893	0.15	-0.7
2,134,848	-		PP_1893	0.22	-0.8
2,134,875	-		PP_1893	0.23	-1.1
2,134,880	+		PP_1893	0.24	+0.2
2,134,880	+		PP_1893	0.24	+0.1
2,134,881	-		PP_1893	0.24	-0.2
2,134,881	-		PP_1893	0.24	-0.8
2,134,881	-		PP_1893	0.24	+0.5
2,134,881	-		PP_1893	0.24	-0.6
2,134,881	-		PP_1893	0.24	+0.7
2,134,881	-		PP_1893	0.24	-0.4
2,135,064	-		PP_1893	0.31	+0.9
2,135,073	+		PP_1893	0.31	+0.2
2,135,074	-		PP_1893	0.31	-0.5
2,135,074	-		PP_1893	0.31	-0.7
2,135,297	+		PP_1893	0.41	+0.2
2,135,297	+		PP_1893	0.41	-0.4
2,135,298	-		PP_1893	0.41	-0.9
2,135,298	-		PP_1893	0.41	+1.0
2,135,384	+		PP_1893	0.44	+0.2
2,135,384	+		PP_1893	0.44	+0.3
2,135,385	-		PP_1893	0.44	+0.3
2,135,385	-		PP_1893	0.44	+0.1
2,135,555	+		PP_1893	0.51	-0.4
2,135,579	+		PP_1893	0.52	+0.2
2,135,580	-		PP_1893	0.52	-0.7
2,135,580	-		PP_1893	0.52	-0.9
2,135,702	-		PP_1893	0.57	-0.5
2,135,855	+		PP_1893	0.63	+1.0
2,135,855	+		PP_1893	0.63	+0.2
2,135,855	+		PP_1893	0.63	+0.6
2,135,856	-		PP_1893	0.63	+1.3
2,135,907	-		PP_1893	0.66	+0.2
2,136,267	+		PP_1893	0.80	-0.5
2,136,267	+		PP_1893	0.80	-0.3
2,136,267	+		PP_1893	0.80	-1.8
2,136,267	+		PP_1893	0.80	+0.6
2,136,267	+		PP_1893	0.80	+1.1
2,136,268	-		PP_1893	0.80	-1.2
2,136,268	-		PP_1893	0.80	-0.4
2,136,268	-		PP_1893	0.80	-0.1
2,136,457	-		PP_1893	0.88	-0.4
2,136,653	+				-0.4
2,136,653	+				-0.6
2,136,653	+				-0.8
2,136,654	-				-0.1
2,136,654	-				-1.1
2,136,654	-				+1.9
2,136,751	-				-0.3
2,136,751	-				+0.1
2,136,751	-				+0.3
2,136,797	+				-0.0
2,136,798	-				+0.7
2,136,798	-				+0.3
2,136,905	+				+0.8
2,136,905	+				+1.0
2,136,906	-				+0.6
2,136,994	+				-0.2
2,136,994	+				+1.3
2,136,994	+				+0.3
2,136,995	-				-1.7
2,136,995	-				-0.3
2,136,995	-				+0.1
2,137,004	+				+2.4
2,137,082	+				-0.1
2,137,082	+				-0.6
2,137,083	-				-1.2
2,137,105	-				-0.5
2,137,253	+		PP_1894	0.18	+1.1
2,137,253	+		PP_1894	0.18	-0.0
2,137,254	-		PP_1894	0.18	+0.0
2,137,270	+		PP_1894	0.21	-0.5
2,137,556	+		PP_1894	0.67	-0.8
2,137,595	-		PP_1894	0.73	+0.6
2,137,638	+		PP_1894	0.80	+1.5
2,137,639	-		PP_1894	0.80	+0.3
2,137,648	+		PP_1894	0.81	-0.2
2,137,648	+		PP_1894	0.81	-0.9
2,137,648	+		PP_1894	0.81	+0.6
2,137,649	-		PP_1894	0.81	-0.9
2,137,649	-		PP_1894	0.81	+0.5
2,137,649	-		PP_1894	0.81	+0.4
2,137,649	-		PP_1894	0.81	-0.6
2,137,649	-		PP_1894	0.81	-0.4
2,137,649	-		PP_1894	0.81	+0.3
2,137,649	-		PP_1894	0.81	+0.5
2,137,649	-		PP_1894	0.81	+0.2
2,137,687	+		PP_1894	0.88	-2.0
2,137,687	+		PP_1894	0.88	+0.3
2,137,687	+		PP_1894	0.88	-1.0
2,137,687	+		PP_1894	0.88	+0.7
2,137,688	-		PP_1894	0.88	-0.6
2,137,688	-		PP_1894	0.88	-0.3
2,137,688	-		PP_1894	0.88	+1.3
2,137,688	-		PP_1894	0.88	+0.2
2,137,688	-		PP_1894	0.88	-0.8
2,137,688	-		PP_1894	0.88	+1.0
2,137,706	-				-0.4
2,137,717	-				+0.5
2,137,733	-				-0.3