Strain Fitness in Pseudomonas putida KT2440 around PP_1744

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
1,943,766	-		PP_1743	0.56	+2.1
1,943,771	+				+0.4
1,943,772	-		PP_1743	0.56	+0.8
1,943,772	-		PP_1743	0.56	-2.4
1,943,772	-		PP_1743	0.56	-0.2
1,943,772	-		PP_1743	0.56	-0.9
1,944,008	+		PP_1743	0.70	-1.2
1,944,009	-		PP_1743	0.71	+0.1
1,944,090	+		PP_1743	0.75	-0.0
1,944,091	-		PP_1743	0.75	-0.5
1,944,091	-		PP_1743	0.75	+0.6
1,944,091	-		PP_1743	0.75	-0.4
1,944,204	-		PP_1743	0.82	-1.6
1,944,204	-		PP_1743	0.82	+0.6
1,944,329	+		PP_1743	0.90	-0.0
1,944,335	+				+1.2
1,944,336	-				+1.4
1,944,342	-				+0.4
1,944,497	+				-1.8
1,944,497	+				-0.7
1,944,497	+				+0.1
1,944,497	+				+1.4
1,944,498	-				+0.6
1,944,661	+				+0.3
1,944,662	-				-0.6
1,944,668	+				+1.4
1,944,668	+				+0.4
1,944,669	-				+1.1
1,944,749	-				-1.2
1,944,764	+				+2.1
1,944,764	+				-0.6
1,944,764	+				+0.4
1,944,764	+				-0.5
1,944,764	+				-0.9
1,944,764	+				+1.4
1,944,764	+				+0.2
1,944,765	-				-0.3
1,944,782	+		PP_1744	0.14	-0.5
1,944,782	+		PP_1744	0.14	-0.0
1,944,782	+		PP_1744	0.14	+1.0
1,944,782	+		PP_1744	0.14	+1.2
1,944,785	+		PP_1744	0.16	+1.7
1,944,785	+		PP_1744	0.16	-0.8
1,944,786	-		PP_1744	0.16	+0.0
1,944,831	+		PP_1744	0.46	-0.2
1,944,898	+				+1.1
1,944,933	+				+1.4
1,944,992	-				+0.9
1,945,080	+				-0.8
1,945,081	-				-0.3
1,945,081	-				-0.2
1,945,306	+		PP_1745	0.23	+0.2
1,945,306	+		PP_1745	0.23	-1.3
1,945,309	-		PP_1745	0.23	-0.3
1,945,309	-		PP_1745	0.23	-1.3
1,945,309	-		PP_1745	0.23	-0.4
1,945,516	-		PP_1745	0.49	-1.0
1,945,516	-				-0.2
1,945,568	-		PP_1745	0.55	+0.5
1,945,568	-		PP_1745	0.55	-0.8
1,945,774	+		PP_1745	0.81	-1.0
1,945,774	+		PP_1745	0.81	-1.3
1,945,774	+		PP_1745	0.81	-0.2
1,945,774	+		PP_1745	0.81	+0.3
1,945,774	+		PP_1745	0.81	+1.1
1,945,774	+		PP_1745	0.81	-1.3
1,945,776	+		PP_1745	0.81	+0.6
1,945,777	-		PP_1745	0.81	+0.8
1,945,873	+				+1.4
1,945,874	-				+1.0