Strain Fitness in Pseudomonas putida KT2440 around PP_1505

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
1,708,443	+		PP_1503	0.59	-1.7
1,708,444	-		PP_1503	0.59	-1.1
1,708,444	-		PP_1503	0.59	+0.6
1,708,489	+		PP_1503	0.69	-2.6
1,708,490	-		PP_1503	0.69	+0.4
1,708,550	-		PP_1503	0.82	+0.0
1,708,610	-				-0.4
1,708,636	+				+0.3
1,708,726	+				-0.3
1,708,727	-				-0.5
1,708,758	+				+0.6
1,708,758	+				+0.9
1,708,759	-				+0.1
1,708,759	-				-0.5
1,708,931	-		PP_1504	0.20	+0.9
1,708,948	-		PP_1504	0.24	-2.3
1,708,994	+		PP_1504	0.37	-0.5
1,708,994	+		PP_1504	0.37	-1.7
1,708,994	+		PP_1504	0.37	+0.0
1,708,994	+		PP_1504	0.37	+0.2
1,708,994	+		PP_1504	0.37	+0.3
1,708,994	+		PP_1504	0.37	-1.0
1,708,994	+		PP_1504	0.37	+1.3
1,708,995	-				+0.8
1,708,995	-		PP_1504	0.37	-0.9
1,708,995	-		PP_1504	0.37	+0.1
1,708,995	-		PP_1504	0.37	-0.4
1,708,998	+		PP_1504	0.38	+0.8
1,708,998	+		PP_1504	0.38	+0.9
1,708,998	+		PP_1504	0.38	+0.7
1,708,998	+		PP_1504	0.38	-0.1
1,708,998	+		PP_1504	0.38	-0.5
1,708,998	+		PP_1504	0.38	-0.2
1,708,998	+		PP_1504	0.38	+0.3
1,709,076	+		PP_1504	0.58	-0.7
1,709,077	-		PP_1504	0.58	+0.2
1,709,358	-				+1.7
1,709,358	-				+0.4
1,709,358	-				+0.7
1,709,411	-				+0.2
1,709,634	+				-0.0
1,709,690	-		PP_1505	0.12	-0.4
1,709,690	-		PP_1505	0.12	+0.7
1,709,830	-		PP_1505	0.17	+1.0
1,710,178	+		PP_1505	0.30	+1.0
1,710,179	-		PP_1505	0.30	+1.1
1,710,179	-		PP_1505	0.30	+0.0
1,710,448	-		PP_1505	0.41	+0.1
1,710,554	-		PP_1505	0.45	+0.3
1,710,596	-		PP_1505	0.46	+0.6
1,710,604	-		PP_1505	0.46	+1.2
1,710,783	+		PP_1505	0.53	+1.2
1,710,783	+		PP_1505	0.53	+1.8
1,710,783	+		PP_1505	0.53	+0.2
1,710,783	+		PP_1505	0.53	+0.7
1,710,783	+		PP_1505	0.53	-0.8
1,710,784	-		PP_1505	0.53	+0.4
1,710,784	-		PP_1505	0.53	+0.1
1,710,784	-		PP_1505	0.53	-0.9
1,710,784	-		PP_1505	0.53	+0.4
1,710,817	+		PP_1505	0.55	+0.7
1,710,818	-		PP_1505	0.55	+2.1
1,710,818	-		PP_1505	0.55	-0.0
1,711,067	+		PP_1505	0.64	-0.7
1,711,067	+		PP_1505	0.64	-0.2
1,711,067	+		PP_1505	0.64	-0.4
1,711,067	+		PP_1505	0.64	+1.0
1,711,067	+		PP_1505	0.64	-0.6
1,711,068	-		PP_1505	0.64	-0.2
1,711,269	+		PP_1505	0.72	-1.7
1,711,269	+		PP_1505	0.72	-0.2
1,711,270	-		PP_1505	0.72	-0.8
1,711,410	+		PP_1505	0.77	-0.4
1,711,410	+		PP_1505	0.77	-1.7
1,711,710	+		PP_1505	0.89	+0.4
1,711,711	-		PP_1505	0.89	+0.3
1,711,747	+				-1.8
1,711,748	-				-1.0
1,711,748	-				+0.6
1,711,768	+				-2.0
1,711,768	+				-1.4
1,711,865	+				-1.5
1,711,866	-				+0.1
1,711,866	-				+0.1
1,711,869	+				+0.1
1,711,869	+				+0.9
1,711,870	-				-0.4
1,711,870	-				+0.6
1,711,870	-				-0.2
1,712,008	-				-1.3
1,712,042	+				+0.4
1,712,161	+				+0.8