Strain Fitness in Pseudomonas putida KT2440 around PP_1377

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
1,568,297	+		PP_1376	0.58	+0.2
1,568,297	+		PP_1376	0.58	+0.9
1,568,297	+		PP_1376	0.58	+0.5
1,568,297	+		PP_1376	0.58	-0.5
1,568,297	+		PP_1376	0.58	+0.6
1,568,298	-		PP_1376	0.58	-0.7
1,568,330	+		PP_1376	0.60	-0.8
1,568,354	+		PP_1376	0.62	-0.0
1,568,354	+		PP_1376	0.62	-1.8
1,568,355	-		PP_1376	0.62	-0.0
1,568,355	-		PP_1376	0.62	-0.2
1,568,454	+		PP_1376	0.70	-0.5
1,568,455	-		PP_1376	0.70	+1.0
1,568,505	+		PP_1376	0.73	-0.9
1,568,505	+		PP_1376	0.73	-0.1
1,568,505	+		PP_1376	0.73	-0.4
1,568,505	+		PP_1376	0.73	+2.5
1,568,506	-		PP_1376	0.73	-1.4
1,568,544	-		PP_1376	0.76	+0.4
1,568,580	+		PP_1376	0.79	-0.6
1,568,605	+		PP_1376	0.81	+1.2
1,568,657	+		PP_1376	0.85	+1.1
1,568,685	+		PP_1376	0.87	+0.6
1,568,685	+		PP_1376	0.87	-0.5
1,568,967	+				-0.9
1,569,020	+				-0.2
1,569,021	-				-1.4
1,569,029	+				+0.0
1,569,029	+				+0.2
1,569,030	-				-2.4
1,569,030	-				+2.5
1,569,041	+				-0.3
1,569,052	+				-1.4
1,569,200	+				-2.5
1,569,200	+				-1.5
1,569,200	+				+0.1
1,569,200	+				-2.2
1,569,201	-				-1.9
1,569,201	-				-2.4
1,569,201	-				-2.2
1,569,336	-		PP_1377	0.12	-2.2
1,569,336	-		PP_1377	0.12	-2.5
1,569,336	-		PP_1377	0.12	-2.5
1,569,661	+		PP_1377	0.39	-1.4
1,569,709	+		PP_1377	0.43	-1.6
1,569,710	-		PP_1377	0.43	-1.9
1,569,817	-		PP_1377	0.52	-0.5
1,570,121	+		PP_1377	0.77	-2.0
1,570,127	+		PP_1377	0.78	-1.3
1,570,128	-		PP_1377	0.78	-1.6
1,570,128	-		PP_1377	0.78	-1.4
1,570,128	-		PP_1377	0.78	-3.1
1,570,152	+		PP_1377	0.80	-3.1
1,570,152	+		PP_1377	0.80	-3.2
1,570,223	+		PP_1377	0.86	-1.0
1,570,224	-		PP_1377	0.86	-1.2
1,570,231	-		PP_1377	0.87	-1.1
1,570,286	+				-2.4
1,570,397	+				+1.8
1,570,493	+				-1.1
1,570,493	+				+3.0
1,570,493	+				-1.0
1,570,494	-				-1.9
1,570,494	-				-2.2
1,570,494	-				-0.2
1,570,494	-				+0.6
1,570,494	-				-0.2
1,570,534	+				-0.3
1,570,534	+				-0.1
1,570,535	-				-0.7
1,570,535	-				-1.1
1,570,538	+				-0.2
1,570,538	+				-0.1
1,570,538	+				+2.2
1,570,538	+				+0.8
1,570,539	-				+0.6
1,570,539	-				-1.1
1,570,539	-				+0.8
1,570,544	+				+0.7
1,570,545	-				+1.1
1,570,554	+				-0.8
1,570,554	+				-0.2
1,570,554	+				+0.9
1,570,555	-				-0.5
1,570,555	-				-0.2
1,570,555	-				-0.4
1,570,555	-				+0.4
1,570,555	-				-0.4
1,570,570	+				-0.1
1,570,592	+				+2.5
1,570,592	+				+0.1
1,570,593	-				-1.9
1,570,593	-				+0.8
1,570,596	-				-1.1
1,570,631	-				-0.3
1,570,676	+				-1.5
1,570,677	-				+1.2
1,570,682	+				-0.7
1,570,683	-				+0.5
1,570,683	-				+0.0
1,570,765	-		PP_1378	0.14	-0.1
1,570,765	-		PP_1378	0.14	-1.8
1,570,765	-		PP_1378	0.14	-1.2
1,570,907	+		PP_1378	0.25	-0.7
1,570,907	+		PP_1378	0.25	-0.5
1,570,907	+		PP_1378	0.25	+0.7
1,570,908	-		PP_1378	0.25	-0.9
1,570,908	-		PP_1378	0.25	-0.1
1,570,908	-		PP_1378	0.25	-1.2
1,570,908	-		PP_1378	0.25	-0.4
1,570,908	-		PP_1378	0.25	+0.6
1,570,941	+		PP_1378	0.28	+0.0
1,570,942	-		PP_1378	0.28	+0.8
1,571,003	+		PP_1378	0.33	+0.0
1,571,004	-				+0.9
1,571,004	-		PP_1378	0.33	+0.1
1,571,004	-		PP_1378	0.33	+0.2
1,571,004	-		PP_1378	0.33	+0.2
1,571,004	-		PP_1378	0.33	-0.6
1,571,004	-		PP_1378	0.33	+0.1
1,571,016	+		PP_1378	0.34	+1.3
1,571,017	-		PP_1378	0.34	-0.7
1,571,057	+		PP_1378	0.37	-0.6
1,571,342	+		PP_1378	0.59	-0.7
1,571,342	+		PP_1378	0.59	+0.3
1,571,343	-		PP_1378	0.59	-0.8
1,571,357	+		PP_1378	0.60	+0.4
1,571,357	+		PP_1378	0.60	-0.4
1,571,357	+		PP_1378	0.60	-1.4
1,571,357	+		PP_1378	0.60	+0.5
1,571,357	+		PP_1378	0.60	-2.1
1,571,358	-		PP_1378	0.60	-0.1
1,571,358	-		PP_1378	0.60	+0.6
1,571,358	-		PP_1378	0.60	-0.7
1,571,358	-		PP_1378	0.60	-0.3
1,571,358	-		PP_1378	0.60	-1.8
1,571,358	-		PP_1378	0.60	+0.9
1,571,358	-		PP_1378	0.60	+0.1
1,571,358	-		PP_1378	0.60	-0.2
1,571,358	-		PP_1378	0.60	-1.2
1,571,358	-		PP_1378	0.60	-0.6
1,571,358	-		PP_1378	0.60	-0.8
1,571,358	-		PP_1378	0.60	-1.0
1,571,358	-		PP_1378	0.60	-0.5
1,571,359	+		PP_1378	0.60	+0.7
1,571,359	+		PP_1378	0.60	-0.3
1,571,360	-		PP_1378	0.60	-0.2
1,571,369	+		PP_1378	0.61	+0.9
1,571,370	-		PP_1378	0.61	-0.0