Strain Fitness in Pseudomonas putida KT2440 around PP_1367

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
1,555,349	-				-1.7
1,555,349	-				-2.0
1,555,370	+				-0.4
1,555,371	-				+0.3
1,555,425	+				+1.3
1,555,557	+				+0.9
1,555,592	-		PP_1366	0.41	+0.3
1,555,592	-		PP_1366	0.41	-2.8
1,555,854	+				+0.6
1,555,855	-				-0.2
1,555,857	+				-0.2
1,555,857	+				-0.7
1,555,858	-				+0.7
1,555,868	+				+0.7
1,555,869	-				-0.4
1,555,885	-				+1.2
1,555,885	-				-0.5
1,555,899	-				+0.4
1,556,011	+				+0.5
1,556,011	+				-0.5
1,556,011	+				+1.9
1,556,011	+				-0.6
1,556,012	-				-0.2
1,556,012	-				-0.1
1,556,034	+				+0.8
1,556,064	+				+0.1
1,556,064	+				+0.4
1,556,064	+				-0.4
1,556,106	+				-1.7
1,556,106	+				-1.4
1,556,107	-				-1.4
1,556,137	+				+1.0
1,556,138	-				-0.6
1,556,138	-				-1.7
1,556,138	-				+1.4
1,556,175	+				-2.6
1,556,175	+				-0.3
1,556,175	+				+0.2
1,556,176	-				-1.1
1,556,176	-				-1.4
1,556,176	-				+0.4
1,556,365	+		PP_1367	0.31	-0.9
1,556,366	-		PP_1367	0.32	-1.0
1,556,366	-		PP_1367	0.32	-1.0
1,556,516	-		PP_1367	0.49	-1.2
1,556,516	-		PP_1367	0.49	-1.7
1,556,607	+		PP_1367	0.60	-1.1
1,556,607	+		PP_1367	0.60	+0.6
1,556,607	+		PP_1367	0.60	-0.1
1,556,607	+		PP_1367	0.60	+0.0
1,556,608	-		PP_1367	0.60	-1.2
1,556,643	+		PP_1367	0.64	-0.6
1,556,643	+		PP_1367	0.64	-0.4
1,556,644	-		PP_1367	0.64	-1.8
1,556,706	+		PP_1367	0.71	-2.1
1,556,707	-		PP_1367	0.72	-1.2
1,556,757	+		PP_1367	0.77	-2.3
1,556,758	-		PP_1367	0.78	-1.6
1,556,758	-		PP_1367	0.78	-1.0
1,556,924	+				-1.8
1,556,925	-				-0.3
1,556,925	-				-2.7
1,557,259	+				-0.1
1,557,265	+				-0.3
1,557,265	+				-0.7
1,557,265	+				-1.1
1,557,266	-				-0.6
1,557,268	+				+0.8
1,557,269	-				+0.1
1,557,269	-				-1.2
1,557,273	-				+0.1
1,557,285	+		PP_1368	0.11	-1.4
1,557,444	+		PP_1368	0.27	+0.1
1,557,469	+		PP_1368	0.29	-0.4
1,557,469	+		PP_1368	0.29	-0.8
1,557,470	-		PP_1368	0.29	+1.0
1,557,470	-		PP_1368	0.29	+2.0
1,557,470	-		PP_1368	0.29	+0.9
1,557,482	-		PP_1368	0.30	-0.1
1,557,711	+		PP_1368	0.53	-0.7