Strain Fitness in Pseudomonas putida KT2440 around PP_1045

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
1,194,564	+		PP_1044	0.42	+0.4
1,195,008	-		PP_1044	0.69	-0.0
1,195,046	+		PP_1044	0.72	+0.7
1,195,047	-		PP_1044	0.72	+0.2
1,195,080	+		PP_1044	0.74	-0.1
1,195,086	+		PP_1044	0.74	+0.2
1,195,291	-		PP_1044	0.86	+0.8
1,195,467	+				+0.7
1,195,468	-				+3.4
1,195,468	-				+0.7
1,195,719	-		PP_1045	0.49	-3.0
1,195,719	-		PP_1045	0.49	-1.0
1,195,948	+				+0.2
1,195,948	+				+1.2
1,195,948	+				-0.2
1,195,952	+				+1.0
1,195,952	+				+0.8
1,195,952	+				+0.8
1,195,953	-				-1.2
1,195,995	-				-1.2
1,195,995	-				+0.8
1,195,995	-				+0.3
1,195,995	-				+0.7
1,195,995	-				+0.8
1,195,995	-				+0.4
1,196,026	+				+0.5
1,196,036	+				-1.1
1,196,037	-				+1.1
1,196,037	-				+0.3
1,196,037	-				+0.5
1,196,037	-				-0.7
1,196,037	-				-0.4
1,196,074	-				-0.3
1,196,180	+		PP_1046	0.14	-1.0
1,196,180	+		PP_1046	0.14	+0.1
1,196,180	+				+1.4
1,196,180	+		PP_1046	0.14	-0.9
1,196,181	-		PP_1046	0.14	-0.4
1,196,377	-		PP_1046	0.25	-0.6
1,196,377	-		PP_1046	0.25	-0.2
1,196,377	-		PP_1046	0.25	+0.5
1,196,377	-		PP_1046	0.25	-0.4
1,196,377	-		PP_1046	0.25	-0.3
1,196,419	+		PP_1046	0.27	-0.5
1,196,422	+		PP_1046	0.27	-0.6
1,196,422	+		PP_1046	0.27	-0.2
1,196,422	+		PP_1046	0.27	+0.4
1,196,422	+		PP_1046	0.27	-0.6
1,196,423	-		PP_1046	0.28	+0.9
1,196,423	-		PP_1046	0.28	-0.4
1,196,423	-		PP_1046	0.28	+0.4
1,196,423	-		PP_1046	0.28	-0.6
1,196,552	+		PP_1046	0.35	+0.8
1,196,553	-		PP_1046	0.35	-0.1
1,196,702	+		PP_1046	0.43	-0.7
1,196,714	-		PP_1046	0.44	+0.3
1,196,760	-		PP_1046	0.47	-0.6
1,196,786	-		PP_1046	0.48	-1.6
1,196,897	-		PP_1046	0.55	+0.5