Strain Fitness in Pseudomonas putida KT2440 around PP_0944

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
1,088,145	+		PP_0942	0.74	-0.4
1,088,145	+		PP_0942	0.74	+0.4
1,088,146	-		PP_0942	0.74	-0.3
1,088,146	-		PP_0942	0.74	-0.6
1,088,313	+		PP_0942	0.86	-1.8
1,088,313	+		PP_0942	0.86	+0.4
1,088,453	+				-0.6
1,088,510	-				-0.1
1,088,546	+				+0.6
1,088,547	-				+0.4
1,088,562	+				-0.3
1,088,562	+				-0.4
1,088,563	-				+0.4
1,088,589	+				-0.1
1,088,589	+				-2.5
1,088,589	+				+1.9
1,088,590	-				+0.5
1,088,590	-				+1.4
1,088,627	+				-1.4
1,088,627	+				+0.4
1,088,627	+				-0.5
1,088,628	-				-0.0
1,088,785	+				-1.0
1,088,863	+		PP_0943	0.27	-0.6
1,088,863	+		PP_0943	0.27	+1.2
1,088,864	-		PP_0943	0.27	-0.5
1,088,864	-		PP_0943	0.27	+0.3
1,088,864	-		PP_0943	0.27	+0.6
1,088,864	-		PP_0943	0.27	-1.0
1,088,882	-		PP_0943	0.32	-0.3
1,089,070	+		PP_0943	0.79	-0.4
1,089,071	-		PP_0943	0.80	-2.2
1,089,071	-		PP_0943	0.80	+0.6
1,089,260	-				+0.7
1,089,493	-		PP_0944	0.26	-0.3
1,089,493	-		PP_0944	0.26	-0.4
1,089,493	-		PP_0944	0.26	-0.2
1,089,628	-		PP_0944	0.35	-0.2
1,089,657	+		PP_0944	0.37	+0.4
1,089,657	+		PP_0944	0.37	+1.1
1,089,658	-		PP_0944	0.38	-1.4
1,089,658	-		PP_0944	0.38	+0.2
1,089,658	-		PP_0944	0.38	+0.6
1,089,665	+		PP_0944	0.38	-0.3
1,089,665	+		PP_0944	0.38	+0.0
1,089,665	+		PP_0944	0.38	+0.1
1,089,665	+		PP_0944	0.38	+0.1
1,089,666	-		PP_0944	0.38	-0.2
1,089,666	-		PP_0944	0.38	-0.0
1,089,666	-		PP_0944	0.38	+0.3
1,089,682	+		PP_0944	0.39	-0.6
1,089,683	-		PP_0944	0.39	-0.9
1,089,683	-		PP_0944	0.39	-0.8
1,090,626	-		PP_0945	0.17	-0.7
1,090,626	-		PP_0945	0.17	-0.7
1,090,626	-		PP_0945	0.17	-0.1
1,090,766	+		PP_0945	0.47	+0.7
1,090,866	-		PP_0945	0.69	+0.2
1,090,974	+				-0.2
1,090,974	+				+0.2
1,090,975	-				-0.9
1,090,981	+				+0.7
1,090,982	-				-0.9
1,091,018	+				-0.3
1,091,018	+				-0.6
1,091,019	-				-0.1
1,091,019	-				-0.0
1,091,019	-				+0.7
1,091,037	+				+0.5
1,091,038	-				-0.2
1,091,112	+		PP_0946	0.19	+0.1
1,091,113	-		PP_0946	0.20	-0.2
1,091,113	-		PP_0946	0.20	-0.2
1,091,113	-		PP_0946	0.20	-0.7
1,091,444	+		PP_0946	0.72	+0.8
1,091,445	-		PP_0946	0.72	+0.2
1,091,517	+		PP_0946	0.83	-0.1
1,091,518	-		PP_0946	0.84	-1.8
1,091,518	-		PP_0946	0.84	+0.8
1,091,518	-		PP_0946	0.84	+0.2
1,091,518	-		PP_0946	0.84	-2.1