Experiment: L-Phenylalanine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0652 and PP_0653 overlap by 4 nucleotides PP_0653 and PP_0654 are separated by 151 nucleotides PP_0654 and PP_0655 are separated by 53 nucleotides PP_0655 and PP_5454 overlap by 4 nucleotides PP_5454 and PP_0656 are separated by 61 nucleotides
PP_0652: PP_0652 - Gluconate transporter, at 760,154 to 761,539
_0652
PP_0653: PP_0653 - conserved protein of unknown function, at 761,536 to 761,817
_0653
PP_0654: PP_0654 - putative malate dehydrogenase, at 761,969 to 762,901
_0654
PP_0655: PP_0655 - Fimbrial protein-related protein, at 762,955 to 763,281
_0655
PP_5454: PP_5454 - conserved membrane protein of unknown function, at 763,278 to 763,637
_5454
PP_0656: PP_0656 - putative Amino acid ABC transporter, permease protein, at 763,699 to 764,520
_0656
Position (kb) 761
762
763 Strain fitness (log2 ratio) -2
-1
0
1
2 at 760.969 kb on - strand, within PP_0652 at 761.037 kb on - strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.091 kb on + strand, within PP_0652 at 761.092 kb on - strand, within PP_0652 at 761.145 kb on - strand, within PP_0652 at 761.398 kb on + strand, within PP_0652 at 761.399 kb on - strand, within PP_0652 at 761.399 kb on - strand, within PP_0652 at 761.399 kb on - strand, within PP_0652 at 761.513 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.524 kb on + strand at 761.524 kb on + strand at 761.524 kb on + strand at 761.524 kb on + strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.645 kb on - strand, within PP_0653 at 761.809 kb on + strand at 761.821 kb on + strand at 761.838 kb on + strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.926 kb on - strand at 761.926 kb on - strand at 761.926 kb on - strand at 761.928 kb on - strand at 761.928 kb on - strand at 761.928 kb on - strand at 761.944 kb on - strand at 761.944 kb on - strand at 762.140 kb on - strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.250 kb on + strand, within PP_0654 at 762.250 kb on + strand, within PP_0654 at 762.251 kb on - strand, within PP_0654 at 762.251 kb on - strand, within PP_0654 at 762.350 kb on + strand, within PP_0654 at 762.351 kb on - strand, within PP_0654 at 762.469 kb on + strand, within PP_0654 at 762.524 kb on + strand, within PP_0654 at 762.524 kb on + strand, within PP_0654 at 762.524 kb on + strand, within PP_0654 at 762.601 kb on + strand, within PP_0654 at 762.710 kb on - strand, within PP_0654 at 762.710 kb on - strand, within PP_0654 at 762.744 kb on - strand, within PP_0654 at 762.899 kb on + strand at 762.900 kb on - strand at 762.900 kb on - strand at 762.964 kb on + strand at 762.964 kb on + strand at 763.003 kb on + strand, within PP_0655 at 763.004 kb on - strand, within PP_0655 at 763.016 kb on + strand, within PP_0655 at 763.016 kb on + strand, within PP_0655 at 763.016 kb on + strand, within PP_0655 at 763.017 kb on - strand, within PP_0655 at 763.017 kb on - strand, within PP_0655 at 763.017 kb on - strand, within PP_0655 at 763.017 kb on - strand, within PP_0655 at 763.017 kb on - strand, within PP_0655 at 763.081 kb on + strand, within PP_0655 at 763.081 kb on + strand, within PP_0655 at 763.081 kb on + strand, within PP_0655 at 763.082 kb on - strand at 763.082 kb on - strand, within PP_0655 at 763.108 kb on + strand, within PP_0655 at 763.176 kb on + strand, within PP_0655 at 763.177 kb on - strand, within PP_0655 at 763.177 kb on - strand, within PP_0655 at 763.177 kb on - strand, within PP_0655 at 763.177 kb on - strand, within PP_0655 at 763.300 kb on + strand at 763.345 kb on + strand, within PP_5454 at 763.345 kb on + strand, within PP_5454 at 763.346 kb on - strand, within PP_5454 at 763.346 kb on - strand, within PP_5454 at 763.364 kb on + strand, within PP_5454 at 763.364 kb on + strand, within PP_5454 at 763.365 kb on - strand, within PP_5454 at 763.365 kb on - strand, within PP_5454 at 763.365 kb on - strand, within PP_5454 at 763.369 kb on - strand, within PP_5454 at 763.369 kb on - strand, within PP_5454 at 763.378 kb on - strand, within PP_5454 at 763.380 kb on + strand, within PP_5454 at 763.380 kb on + strand, within PP_5454 at 763.380 kb on + strand, within PP_5454 at 763.381 kb on - strand, within PP_5454 at 763.381 kb on - strand, within PP_5454 at 763.393 kb on + strand, within PP_5454 at 763.403 kb on + strand, within PP_5454 at 763.403 kb on + strand, within PP_5454 at 763.404 kb on - strand, within PP_5454 at 763.404 kb on - strand, within PP_5454 at 763.494 kb on - strand, within PP_5454 at 763.494 kb on - strand, within PP_5454 at 763.494 kb on - strand, within PP_5454 at 763.630 kb on - strand at 763.630 kb on - strand at 763.709 kb on + strand at 763.709 kb on + strand at 763.709 kb on + strand at 763.709 kb on + strand at 763.710 kb on - strand at 763.775 kb on + strand at 763.775 kb on + strand at 763.775 kb on + strand at 763.776 kb on - strand at 763.776 kb on - strand at 763.776 kb on - strand at 763.808 kb on + strand, within PP_0656 at 763.814 kb on + strand, within PP_0656 at 763.814 kb on + strand, within PP_0656
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine 5 mM (C) remove 760,969 - PP_0652 0.59 -1.5 761,037 - PP_0652 0.64 -1.9 761,081 + PP_0652 0.67 +0.6 761,081 + PP_0652 0.67 +0.1 761,081 + PP_0652 0.67 -0.4 761,081 + PP_0652 0.67 -1.4 761,081 + PP_0652 0.67 +1.0 761,081 + PP_0652 0.67 -1.0 761,081 + PP_0652 0.67 -0.5 761,082 - PP_0652 0.67 +1.8 761,082 - PP_0652 0.67 +0.1 761,082 - PP_0652 0.67 +0.5 761,085 + PP_0652 0.67 +0.4 761,085 + PP_0652 0.67 -1.9 761,085 + PP_0652 0.67 +0.2 761,085 + PP_0652 0.67 +1.1 761,085 + PP_0652 0.67 +0.5 761,085 + PP_0652 0.67 +0.5 761,085 + PP_0652 0.67 -0.5 761,085 + PP_0652 0.67 -0.5 761,085 + PP_0652 0.67 +0.2 761,085 + PP_0652 0.67 -1.6 761,085 + PP_0652 0.67 -0.4 761,085 + PP_0652 0.67 +0.9 761,086 - PP_0652 0.67 -0.2 761,086 - PP_0652 0.67 +0.1 761,086 - PP_0652 0.67 -0.2 761,086 - PP_0652 0.67 -0.0 761,086 - PP_0652 0.67 -0.8 761,086 - PP_0652 0.67 +0.3 761,086 - PP_0652 0.67 +0.3 761,086 - PP_0652 0.67 +1.0 761,086 - PP_0652 0.67 -0.9 761,086 - PP_0652 0.67 +0.1 761,091 + PP_0652 0.68 -1.2 761,092 - PP_0652 0.68 -1.4 761,145 - PP_0652 0.72 -0.4 761,398 + PP_0652 0.90 -0.8 761,399 - PP_0652 0.90 -1.2 761,399 - PP_0652 0.90 +0.5 761,399 - PP_0652 0.90 -0.3 761,513 + -1.1 761,516 + +0.9 761,516 + -1.4 761,516 + +2.6 761,516 + +0.9 761,516 + -0.4 761,516 + +0.1 761,516 + -0.6 761,517 - -0.9 761,517 - -0.3 761,517 - -0.7 761,517 - -0.3 761,517 - -0.2 761,522 + +0.4 761,522 + -0.6 761,522 + -0.3 761,522 + +0.6 761,522 + +0.3 761,522 + +0.6 761,522 + -0.2 761,522 + +0.3 761,522 + -0.7 761,522 + +1.0 761,522 + -0.1 761,522 + -1.3 761,522 + -0.9 761,523 - +0.6 761,523 - +1.3 761,523 - +0.4 761,523 - -1.1 761,523 - -1.8 761,523 - +0.2 761,523 - -0.2 761,523 - +0.8 761,523 - -0.8 761,523 - +0.7 761,523 - +0.4 761,523 - +0.4 761,523 - -0.3 761,523 - +0.3 761,524 + +2.2 761,524 + +0.4 761,524 + +0.5 761,524 + +0.9 761,525 - +0.7 761,525 - +0.2 761,525 - -0.2 761,525 - +0.4 761,525 - +0.5 761,525 - -0.5 761,528 + +0.9 761,528 + +0.6 761,528 + +0.8 761,528 + -0.7 761,528 + -2.1 761,528 + +1.3 761,528 + +0.7 761,529 - +0.3 761,529 - -0.4 761,529 - -1.1 761,529 - -0.4 761,529 - +0.7 761,645 - PP_0653 0.39 -0.4 761,809 + +0.1 761,821 + +0.5 761,838 + +0.5 761,916 - -2.0 761,916 - -0.1 761,916 - -0.0 761,916 - -0.5 761,916 - -0.6 761,916 - -1.0 761,926 - -0.4 761,926 - -0.2 761,926 - -0.2 761,928 - -0.5 761,928 - +0.2 761,928 - +0.5 761,944 - +0.9 761,944 - -0.1 762,140 - PP_0654 0.18 +1.2 762,243 + PP_0654 0.29 -0.5 762,243 + PP_0654 0.29 -0.9 762,243 + PP_0654 0.29 +0.1 762,243 + PP_0654 0.29 +1.3 762,243 + PP_0654 0.29 -0.8 762,244 - PP_0654 0.29 +0.1 762,244 - PP_0654 0.29 +0.5 762,244 - PP_0654 0.29 -0.4 762,244 - PP_0654 0.29 -0.7 762,244 - PP_0654 0.29 -0.8 762,244 - PP_0654 0.29 -2.0 762,244 - PP_0654 0.29 +0.6 762,250 + PP_0654 0.30 +0.3 762,250 + PP_0654 0.30 -0.0 762,251 - PP_0654 0.30 +0.1 762,251 - PP_0654 0.30 -0.3 762,350 + PP_0654 0.41 +0.5 762,351 - PP_0654 0.41 +0.4 762,469 + PP_0654 0.54 -0.7 762,524 + PP_0654 0.59 +0.7 762,524 + PP_0654 0.59 -0.1 762,524 + PP_0654 0.59 -0.5 762,601 + PP_0654 0.68 -0.2 762,710 - PP_0654 0.79 +0.8 762,710 - PP_0654 0.79 -0.1 762,744 - PP_0654 0.83 +0.4 762,899 + -0.4 762,900 - +0.6 762,900 - +0.4 762,964 + -0.8 762,964 + +1.1 763,003 + PP_0655 0.15 -1.5 763,004 - PP_0655 0.15 -1.1 763,016 + PP_0655 0.19 -0.5 763,016 + PP_0655 0.19 -0.6 763,016 + PP_0655 0.19 +0.7 763,017 - PP_0655 0.19 +0.2 763,017 - PP_0655 0.19 -0.6 763,017 - PP_0655 0.19 -0.2 763,017 - PP_0655 0.19 +0.1 763,017 - PP_0655 0.19 -0.4 763,081 + PP_0655 0.39 +0.3 763,081 + PP_0655 0.39 -0.1 763,081 + PP_0655 0.39 +0.3 763,082 - +0.1 763,082 - PP_0655 0.39 -0.9 763,108 + PP_0655 0.47 -0.4 763,176 + PP_0655 0.68 +0.4 763,177 - PP_0655 0.68 +0.9 763,177 - PP_0655 0.68 -0.1 763,177 - PP_0655 0.68 -0.7 763,177 - PP_0655 0.68 +1.2 763,300 + +0.3 763,345 + PP_5454 0.19 -0.6 763,345 + PP_5454 0.19 -0.2 763,346 - PP_5454 0.19 -1.9 763,346 - PP_5454 0.19 +1.2 763,364 + PP_5454 0.24 -0.8 763,364 + PP_5454 0.24 +0.4 763,365 - PP_5454 0.24 -0.0 763,365 - PP_5454 0.24 +2.0 763,365 - PP_5454 0.24 -0.1 763,369 - PP_5454 0.25 -0.5 763,369 - PP_5454 0.25 -0.3 763,378 - PP_5454 0.28 +0.5 763,380 + PP_5454 0.28 +0.6 763,380 + PP_5454 0.28 +0.4 763,380 + PP_5454 0.28 -0.1 763,381 - PP_5454 0.29 +1.0 763,381 - PP_5454 0.29 -0.3 763,393 + PP_5454 0.32 +0.3 763,403 + PP_5454 0.35 +0.9 763,403 + PP_5454 0.35 -0.0 763,404 - PP_5454 0.35 +0.2 763,404 - PP_5454 0.35 +0.6 763,494 - PP_5454 0.60 +0.4 763,494 - PP_5454 0.60 -2.0 763,494 - PP_5454 0.60 +0.6 763,630 - +0.5 763,630 - +0.4 763,709 + -0.1 763,709 + +0.5 763,709 + -1.3 763,709 + -0.4 763,710 - -0.4 763,775 + -0.7 763,775 + +0.2 763,775 + -0.0 763,776 - +0.0 763,776 - -0.2 763,776 - +1.2 763,808 + PP_0656 0.13 +1.4 763,814 + PP_0656 0.14 +0.3 763,814 + PP_0656 0.14 +0.6
Or see this region's nucleotide sequence