Experiment: L-Phenylalanine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0547 and PP_0548 overlap by 4 nucleotides PP_0548 and PP_0549 overlap by 4 nucleotides PP_0549 and PP_0550 are separated by 107 nucleotides
PP_0547: PP_0547 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 635,777 to 637,126
_0547
PP_0548: PP_0548 - putative phenylacrylic acid decarboxylase, padA1, at 637,123 to 637,752
_0548
PP_0549: PP_0549 - putative Lipoprotein, at 637,749 to 638,036
_0549
PP_0550: PP_0550 - conserved protein of unknown function, at 638,144 to 638,788
_0550
Position (kb) 637
638 Strain fitness (log2 ratio) -2
-1
0
1 at 636.657 kb on + strand, within PP_0547 at 636.657 kb on + strand, within PP_0547 at 636.657 kb on + strand, within PP_0547 at 636.738 kb on + strand, within PP_0547 at 636.755 kb on + strand, within PP_0547 at 636.755 kb on + strand, within PP_0547 at 636.755 kb on + strand, within PP_0547 at 636.755 kb on + strand, within PP_0547 at 636.932 kb on + strand, within PP_0547 at 636.932 kb on + strand, within PP_0547 at 637.849 kb on - strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.873 kb on - strand, within PP_0549 at 637.873 kb on - strand, within PP_0549 at 637.908 kb on + strand, within PP_0549 at 638.008 kb on + strand at 638.009 kb on - strand at 638.009 kb on - strand at 638.064 kb on + strand at 638.065 kb on - strand at 638.065 kb on - strand at 638.074 kb on + strand at 638.145 kb on + strand at 638.239 kb on + strand, within PP_0550 at 638.295 kb on - strand, within PP_0550 at 638.295 kb on - strand, within PP_0550 at 638.432 kb on - strand, within PP_0550 at 638.619 kb on - strand, within PP_0550 at 638.677 kb on + strand, within PP_0550 at 638.723 kb on + strand, within PP_0550 at 638.724 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine 5 mM (C) remove 636,657 + PP_0547 0.65 -0.6 636,657 + PP_0547 0.65 -0.5 636,657 + PP_0547 0.65 -0.6 636,738 + PP_0547 0.71 +0.8 636,755 + PP_0547 0.72 -0.0 636,755 + PP_0547 0.72 +0.8 636,755 + PP_0547 0.72 -0.3 636,755 + PP_0547 0.72 +0.8 636,932 + PP_0547 0.86 +0.8 636,932 + PP_0547 0.86 +1.4 637,849 - PP_0549 0.35 +0.2 637,872 + PP_0549 0.43 +0.5 637,872 + PP_0549 0.43 -0.7 637,872 + PP_0549 0.43 -0.0 637,872 + PP_0549 0.43 +0.8 637,872 + PP_0549 0.43 -0.5 637,873 - PP_0549 0.43 +0.5 637,873 - PP_0549 0.43 +0.4 637,908 + PP_0549 0.55 -0.4 638,008 + -0.4 638,009 - +0.4 638,009 - +0.7 638,064 + -1.5 638,065 - +0.2 638,065 - +0.9 638,074 + +0.0 638,145 + -2.1 638,239 + PP_0550 0.15 -0.6 638,295 - PP_0550 0.23 -1.2 638,295 - PP_0550 0.23 -0.9 638,432 - PP_0550 0.45 +0.9 638,619 - PP_0550 0.74 +0.3 638,677 + PP_0550 0.83 +0.2 638,723 + PP_0550 0.90 -0.6 638,724 - -0.9
Or see this region's nucleotide sequence