Strain Fitness in Pseudomonas putida KT2440 around PP_5426

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
106,850	+		PP_0101	0.47	+0.4
106,851	-		PP_0101	0.47	-2.1
106,921	+		PP_0101	0.52	+0.0
106,921	+		PP_0101	0.52	+0.8
107,030	-		PP_0101	0.59	-1.7
107,250	-		PP_0101	0.74	-1.3
107,254	-		PP_0101	0.74	+0.4
107,276	+		PP_0101	0.75	-0.7
107,302	+		PP_0101	0.77	-0.5
107,302	+		PP_0101	0.77	+0.6
107,303	-		PP_0101	0.77	+0.5
107,303	-		PP_0101	0.77	+0.7
107,460	-		PP_0101	0.87	-0.1
107,508	+				-0.5
107,508	+				-0.3
107,509	-				+0.6
107,509	-				+0.8
107,509	-				-0.7
107,509	-				+0.4
107,510	+				+0.3
107,511	-				-1.6
107,511	-				-0.2
107,511	-				-0.0
107,555	+				+0.0
107,555	+				-1.5
107,650	-				-0.3
107,672	-				-0.6
107,749	+				-0.0
107,749	+				-1.7
107,749	+				+1.0
107,781	+				-0.4
107,795	+				+1.9
107,795	+				+0.6
107,795	+				-0.2
107,795	+				+0.9
107,795	+				-1.5
107,795	+				-0.4
107,795	+				-0.1
107,795	+				+0.2
107,796	-				-0.8
107,796	-				+0.5
107,796	-				-1.3
107,796	-				+0.9
107,796	-				+0.4
107,797	+				-0.6
107,798	-				-0.9
107,798	-				+0.3
107,798	-				+0.7
107,798	-				-1.1
107,798	-				+1.2
107,798	-				-0.2
107,896	+		PP_5426	0.15	-1.0
107,934	-		PP_5426	0.21	+0.2
107,934	-		PP_5426	0.21	-1.2
107,934	-		PP_5426	0.21	-1.7
107,934	-		PP_5426	0.21	-2.3
108,067	+		PP_5426	0.42	-1.5
108,068	-		PP_5426	0.42	-0.6
108,106	+		PP_5426	0.48	+1.3
108,107	-		PP_5426	0.48	-1.0
108,135	+		PP_5426	0.52	-1.0
108,135	+		PP_5426	0.52	-1.2
108,135	+		PP_5426	0.52	-3.3
108,135	+		PP_5426	0.52	-0.7
108,135	+		PP_5426	0.52	-1.4
108,136	-		PP_5426	0.52	-1.0
108,136	-		PP_5426	0.52	-0.5
108,136	-		PP_5426	0.52	-0.0
108,136	-		PP_5426	0.52	-0.5
108,172	+		PP_5426	0.58	-2.9
108,173	-		PP_5426	0.58	+0.2
108,192	+		PP_5426	0.61	-0.0
108,274	+		PP_5426	0.74	-0.7
108,274	+		PP_5426	0.74	-1.6
108,274	+		PP_5426	0.74	-1.3
108,275	-		PP_5426	0.74	-0.7
108,412	-				-2.0
108,412	-				-0.7
108,458	+				-0.3
108,458	+				-1.6
108,459	-				-1.8
108,459	-				+2.9
108,459	-				+0.6
108,459	-				+0.2
108,480	-				-1.8
108,485	-				+0.6
108,493	-				-0.7
108,494	+				-0.8
108,495	-				-0.4
108,513	-				-0.7
108,522	-				+0.1
108,522	-				-0.8
108,522	-				-0.5
108,566	+				-0.5
108,567	-				+0.7
108,664	+				+1.6
108,665	-				+0.8
108,665	-				-0.3
108,665	-				+0.4
108,665	-				+0.3
108,666	+				-1.2
108,667	-				-0.4
108,667	-				-1.0
108,667	-				-1.2
108,709	+				-0.7
108,709	+				-0.2
108,710	-				+0.1
108,710	-				-0.5
108,794	-				-1.7
108,794	-				+1.0
108,794	-				-0.3
109,121	+		PP_0103	0.28	-0.8
109,143	+		PP_0103	0.30	-1.5
109,143	+		PP_0103	0.30	+0.7
109,143	+		PP_0103	0.30	-0.3
109,144	-		PP_0103	0.30	-0.6
109,144	-		PP_0103	0.30	+0.4
109,144	-		PP_0103	0.30	+0.1
109,144	-		PP_0103	0.30	-1.1
109,203	+		PP_0103	0.35	-1.8
109,204	-		PP_0103	0.35	+0.6
109,294	-		PP_0103	0.43	+0.3