Strain Fitness in Pseudomonas putida KT2440 around PP_5236

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
5,968,228	-				+0.1
5,968,283	+		PP_5723	0.20	-1.0
5,968,283	+		PP_5723	0.20	-0.8
5,968,284	-				+1.3
5,968,284	-		PP_5723	0.20	-0.7
5,968,470	+		PP_5723	0.72	-1.3
5,968,471	-		PP_5723	0.72	-0.7
5,968,471	-		PP_5723	0.72	+0.5
5,968,557	+				-0.1
5,968,557	+				-0.9
5,968,772	-		PP_5235	0.66	-0.0
5,968,881	+				-0.9
5,968,889	-				+0.8
5,968,889	-				+0.2
5,968,902	+		PP_5724	0.11	-0.8
5,968,902	+		PP_5724	0.11	+1.1
5,968,903	-		PP_5724	0.11	-0.7
5,968,973	+		PP_5724	0.31	+0.1
5,968,974	-		PP_5724	0.31	+0.1
5,968,974	-		PP_5724	0.31	+0.7
5,968,974	-		PP_5724	0.31	-0.8
5,969,154	+		PP_5724	0.82	+0.3
5,969,154	+		PP_5724	0.82	-0.6
5,969,155	-		PP_5724	0.82	+0.0
5,969,202	+				-1.1
5,969,202	+				-1.8
5,969,203	-				-0.4
5,969,203	-				+1.1
5,969,278	+				-1.2
5,969,278	+				-2.1
5,969,278	+				-1.7
5,969,279	-				+0.3
5,969,279	-				-1.3
5,969,279	-				-3.0
5,969,279	-				+0.6
5,969,328	+				+0.5
5,969,549	+		PP_5236	0.18	-1.4
5,969,550	-		PP_5236	0.18	-0.3
5,969,735	+		PP_5236	0.27	-0.5
5,969,780	+		PP_5236	0.29	-0.7
5,969,804	+		PP_5236	0.30	-0.6
5,969,846	+		PP_5236	0.32	-0.8
5,969,846	+		PP_5236	0.32	-2.0
5,969,846	+		PP_5236	0.32	-0.9
5,969,847	-		PP_5236	0.32	-1.2
5,969,847	-		PP_5236	0.32	-2.0
5,969,847	-		PP_5236	0.32	-0.3
5,969,847	-		PP_5236	0.32	+0.6
5,969,847	-		PP_5236	0.32	-1.6
5,969,847	-		PP_5236	0.32	+0.7
5,969,894	+		PP_5236	0.34	-1.6
5,969,894	+		PP_5236	0.34	-1.0
5,969,895	-		PP_5236	0.34	-0.3
5,969,900	+		PP_5236	0.34	-1.2
5,970,010	+		PP_5236	0.40	-2.8
5,970,010	+		PP_5236	0.40	-0.0
5,970,010	+		PP_5236	0.40	+1.0
5,970,010	+		PP_5236	0.40	-1.9
5,970,010	+		PP_5236	0.40	-0.6
5,970,011	-		PP_5236	0.40	-1.5
5,970,011	-		PP_5236	0.40	-1.7
5,970,450	+		PP_5236	0.60	-2.4
5,970,539	+		PP_5236	0.64	-2.6
5,970,605	+		PP_5236	0.68	-1.0
5,970,606	-		PP_5236	0.68	-1.4
5,970,608	+		PP_5236	0.68	-1.3
5,970,608	+		PP_5236	0.68	-0.7
5,970,609	-		PP_5236	0.68	+0.4
5,970,609	-		PP_5236	0.68	-0.3
5,970,650	+		PP_5236	0.70	-0.7
5,970,651	-		PP_5236	0.70	+0.9
5,970,733	+		PP_5236	0.74	-0.7
5,970,733	+		PP_5236	0.74	-1.7
5,970,734	-		PP_5236	0.74	-0.0
5,970,734	-		PP_5236	0.74	-0.5
5,970,984	+		PP_5236	0.85	+1.7
5,970,985	-		PP_5236	0.85	-2.0
5,970,991	+		PP_5236	0.86	-1.0
5,970,992	-		PP_5236	0.86	-1.4
5,970,992	-		PP_5236	0.86	-2.2
5,971,113	-				-0.6
5,971,254	-				+0.4
5,971,254	-				-1.4
5,971,319	+				-1.4
5,971,319	+				+0.6
5,971,319	+				+0.4
5,971,319	+				+1.1
5,971,319	+				-0.8
5,971,320	-				+1.4
5,971,320	-				+0.3
5,971,320	-				+0.8
5,971,326	+				-1.0
5,971,326	+				-0.6
5,971,640	+				+0.0
5,971,659	+				-0.3
5,971,663	+				-0.0
5,971,664	-				+0.9
5,971,670	-				+0.4
5,971,673	+				+0.3
5,971,704	+				-1.3
5,971,762	+				+0.1
5,971,826	+				-0.1
5,971,827	-				+0.5
5,971,868	-				+0.5
5,971,918	-				-0.2
5,972,051	+				-0.6
5,972,088	-				+0.1
5,972,196	+				+0.7
5,972,197	-				+0.7
5,972,229	+				-0.5